Thanks, I found the problem, I was using a wrong index file :P My bad,<br><br><br><br><div class="gmail_quote">On Wed, Apr 7, 2010 at 8:32 PM, Mark Abraham <span dir="ltr"><<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="im">On 8/04/2010 10:22 AM, Camilo Andrés Jimenez Cruz wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi all<br>
<br>
I am using gromacs-3.3.99's g_sas_s in a long trajectory and I get this<br>
error right away. I assume its memory capacity, is there a way (other<br>
than cutting the trj in smaller chunks?)<br>
</blockquote>
<br></div>
Use a bigger computer? See g_sas -h for some built-in options to do a smaller part of the calculation.<br>
<br>
Mark<div><div></div><div class="h5"><br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Select a group: Select a group: *** glibc detected ***<br>
/usr/local/gromacs-3.3.99_20071008/bin/g_sas_s: malloc(): memory corruption:<br>
0x000000000a809680 ***<br>
======= Backtrace: =========<br>
/lib64/libc.so.6[0x38b8c71d21]<br>
/lib64/libc.so.6(__libc_calloc+0xc3)[0x38b8c72bb3]<br>
/usr/local/gromacs-3.3.99_20071008/bin/g_sas_s[0x4257d5]<br>
/usr/local/gromacs-3.3.99_20071008/bin/g_sas_s[0x40419a]<br>
/usr/local/gromacs-3.3.99_20071008/bin/g_sas_s[0x405b1a]<br>
/usr/local/gromacs-3.3.99_20071008/bin/g_sas_s[0x402de3]<br>
/lib64/libc.so.6(__libc_start_main+0xf4)[0x38b8c1d8b4]<br>
/usr/local/gromacs-3.3.99_20071008/bin/g_sas_s[0x402d19]<br>
======= Memory map: ========<br>
00400000-00599000 r-xp 00000000 08:05 813706<br>
/usr/local/gromacs-3.3.99_20071008/bin/g_sas_s<br>
00799000-007a2000 rwxp 00199000 08:05 813706<br>
/usr/local/gromacs-3.3.99_20071008/bin/g_sas_s<br>
007a2000-007ad000 rwxp 007a2000 00:00 0<br>
0a7dd000-0a840000 rwxp 0a7dd000 00:00 0<br>
<br>
thanks in advance<br>
<br>
--<br>
Camilo Andrés Jiménez Cruz<br>
<br>
</blockquote></div></div><font color="#888888">
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</font></blockquote></div><br><br clear="all"><br>-- <br>Camilo Andrés Jiménez Cruz<br><br>