<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><br></div>Dear Satish,<div><br></div><div>you'll find more help in the mailing list of GROMACS. </div><div><br></div><div>regarding the use of g_rmsdist, the option -h is very useful ... </div><div>you can access single residues or subpart of a system by using</div><div>and index.</div><div><br></div><div>XAvier.<br><div><br><div>Begin forwarded message:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" color="#000000" style="font: 12.0px Helvetica; color: #000000"><b>From: </b></font><font face="Helvetica" size="3" style="font: 12.0px Helvetica">satish kumar ainala <<a href="mailto:ainalaboss@gmail.com">ainalaboss@gmail.com</a>></font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" color="#000000" style="font: 12.0px Helvetica; color: #000000"><b>Date: </b></font><font face="Helvetica" size="3" style="font: 12.0px Helvetica">April 13, 2010 12:14:17 PM GMT+02:00</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" color="#000000" style="font: 12.0px Helvetica; color: #000000"><b>To: </b></font><font face="Helvetica" size="3" style="font: 12.0px Helvetica"><a href="mailto:x.periole@rug.nl">x.periole@rug.nl</a></font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" color="#000000" style="font: 12.0px Helvetica; color: #000000"><b>Subject: </b></font><font face="Helvetica" size="3" style="font: 12.0px Helvetica"><b>small help</b></font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><br></div> </div>Dear sir,<br> I am satish kumar persueing M.Sc Bioinfromatics from pondicherry university(INDIA). I have struck with a small command i need ur help to complete this procedure. <span style="background-color: rgb(255, 255, 0);"><br> <br><span style="background-color: rgb(255, 255, 255);"> Syntax for - <span style="background-color: rgb(255, 255, 51);">g_rmsdist <span style="background-color: rgb(255, 255, 255);">command for a single residue i want an example how to use this command for generating rmsd for a single flexible residue..<br> <br> Plz help me sir in this regard..Thanking You .<br><br>Yours Obediently ,<br>Satish kumar<br><br></span></span></span><span style="background-color: rgb(255, 255, 255);"></span><span style="background-color: rgb(102, 51, 0);"></span><br> </span></blockquote></div><br></div></body></html>