In case you use the GIT version of the analysis tools you don't need to convert the trajectories first.<div>I've added that the analysis tools can read all vmd supported file formats if GROMACS finds the vmd libraries.</div>
<div><br></div><div>Roland<br><br><div class="gmail_quote">On Fri, Apr 16, 2010 at 11:33 AM, XAvier Periole <span dir="ltr"><<a href="mailto:x.periole@rug.nl">x.periole@rug.nl</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<br>
Well I guess you want to use gmx analysis tools so you'll have to<br>
build the gmx topology of your system when necessary! Often<br>
only a pdb file or a gro file is sufficient.<div><div></div><div class="h5"><br>
<br>
On Apr 16, 2010, at 5:24 PM, ram bio wrote:<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Thanks Xavier,<br>
<br>
Could you make it more eloborate...<br>
<br>
Ram<br>
<br>
On Fri, Apr 16, 2010 at 4:38 PM, XAvier Periole <<a href="mailto:x.periole@rug.nl" target="_blank">x.periole@rug.nl</a>> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<br>
VMD reads Desmond trajectories and writes GMX format ...<br>
Rests the topology to deal with ...<br>
<br>
On Apr 16, 2010, at 4:15 PM, ram bio wrote:<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Dear All,<br>
<br>
I have run a dynamics of protein ligand complex in lipid bilayer dppc<br>
using desmond software and would like to convert the trajectory files<br>
files into gromacs format, is it possible?? if so, please let me know<br>
your suggestions.<br>
<br>
Thanks,<br>
<br>
Ram<br>
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