Dear Justin,<br>Hello again<br><br>Thanks for the message. I want to increase the distance between solutes in simulation box before MD simulation. How can I do it?<br><br>Rasoul<br><br><div class="gmail_quote">On Sat, Apr 17, 2010 at 5:16 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
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<br>
rasoul nasiri wrote:<br>
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Dear All,<br>
Hello<br>
<br>
I understand one can adjust distance of between solvent molecules by genbox command and -vdwd but I don't know, how do it between the solutes?<br>
<br>
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<br></div>
Position your solutes using editconf -center, then add solvent.<br>
<br>
-Justin<br>
<br>
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Thanks for helping!<br>
<br>
Rasoul<br>
<br>
</blockquote>
<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
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