<P> Hello, I want to generate the em.tpr file, but it arise the warning like this :</P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><EM>Warning: atom name <?xml:namespace prefix = st1 ns = "urn:schemas-microsoft-com:office:smarttags" /><st1:chmetcnv w:st="on" TCSC="0" NumberType="1" Negative="False" HasSpace="True" SourceValue="1" UnitName="in">1 in</st1:chmetcnv> TBP_wat.top and 10tbpc12wat1.gro does not match (C13 - OW)<?xml:namespace prefix = o ns = "urn:schemas-microsoft-com:office:office" /><o:p></o:p></EM></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><EM>Warning: atom name <st1:chmetcnv w:st="on" TCSC="0" NumberType="1" Negative="False" HasSpace="True" SourceValue="2" UnitName="in">2 in</st1:chmetcnv> TBP_wat.top and 10tbpc12wat1.gro does not match (C10 - HW1)<o:p></o:p></EM></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><EM>Warning: atom name <st1:chmetcnv w:st="on" TCSC="0" NumberType="1" Negative="False" HasSpace="True" SourceValue="3" UnitName="in">3 in</st1:chmetcnv> TBP_wat.top and 10tbpc12wat1.gro does not match (C7 - HW2)<o:p></o:p></EM></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><EM>Warning: atom name <st1:chmetcnv w:st="on" TCSC="0" NumberType="1" Negative="False" HasSpace="True" SourceValue="4" UnitName="in">4 in</st1:chmetcnv> TBP_wat.top and 10tbpc12wat1.gro does not match (C6 - OW)<o:p></o:p></EM></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><EM>Warning: atom name <st1:chmetcnv w:st="on" TCSC="0" NumberType="1" Negative="False" HasSpace="True" SourceValue="5" UnitName="in">5 in</st1:chmetcnv> TBP_wat.top and 10tbpc12wat1.gro does not match (O5 - HW1)<o:p></o:p></EM></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><EM>Warning: atom name <st1:chmetcnv w:st="on" TCSC="0" NumberType="1" Negative="False" HasSpace="True" SourceValue="6" UnitName="in">6 in</st1:chmetcnv> TBP_wat.top and 10tbpc12wat1.gro does not match (P1 - HW2)<o:p></o:p></EM></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><EM>Warning: atom name <st1:chmetcnv w:st="on" TCSC="0" NumberType="1" Negative="False" HasSpace="True" SourceValue="7" UnitName="in">7 in</st1:chmetcnv> TBP_wat.top and 10tbpc12wat1.gro does not match (O4 - OW)</EM></SPAN></P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US><EM></EM></SPAN> </P>
<P class=MsoNormal style="MARGIN: 0cm 0cm 0pt"><SPAN lang=EN-US>My system is water and dodecane (from 0 to 5 nm of the z axis is water box, 5 to 10 nm dodecane box), and the TBP dissolves in the dodecane, if I overlook it , mdrun can not do the energy minimization well, and the TBP molecule will be tattered. </SPAN></P>
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<P><SPAN lang=EN-US>I hope you can help me ,thank you very much!</P>
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