<div>Dear Erik</div>
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<div>thank for your answer.</div>
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<div>my rtp file for amber 03 force field is as follow :</div>
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<div>[ NGLY ] <br> [ atoms ] <br> N amber99_39 0.29430 1 <br> H1 amber99_17 0.16420 2 <br> H2 amber99_17 0.16420 3 <br> H3 amber99_17 0.16420 4 <br>
CA amber99_11 -0.01000 5 <br> HA1 amber99_28 0.08950 6 <br> HA2 amber99_28 0.08950 7 <br> C amber99_2 0.61630 8 <br> O amber99_41 -0.57220 9 </div>
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<div>and my top file is as follow :</div>
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<div>[ atoms ] <br>; nr type resnr residue atom cgnr charge mass </div>
<div> 1 amber99_39 1 NGLY N 1 0.2943 14.01 <br> 2 amber99_17 1 NGLY H1 2 0.1642 1.008 <br> 3 amber99_17 1 NGLY H2 2 0.1642 1.008 </div>
<div> 4 amber99_17 1 NGLY H3 2 0.1642 1.008 </div>
<div> 5 amber99_11 1 NGLY CA 3 -0.01 12.01 </div>
<div> 6 amber99_28 1 NGLY HA1 4 0.0895 1.008 </div>
<div> 7 amber99_28 1 NGLY HA2 5 0.0895 1.008 </div>
<div> 8 amber99_2 1 NGLY C 6 0.6163 12.01 </div>
<div> 9 amber99_41 1 NGLY O 7 -0.5722 16 </div>
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<div>what relation is there between both of my rtp and top file in above ?</div>