I suggest you start at <a href="http://manual.gromacs.org/current/online/flow.html">http://manual.gromacs.org/current/online/flow.html</a><br><br>There are two other links:<br><br><ol><li><a href="http://nmr.chem.uu.nl/~tsjerk/course/molmod/">http://nmr.chem.uu.nl/~tsjerk/course/molmod/</a></li>
<li><a href="http://www.dddc.ac.cn/embo04/practicals/9_14_1.htm">http://www.dddc.ac.cn/embo04/practicals/9_14_1.htm</a></li></ol><br><br>--<br>Rodrigo Antonio Faccioli<br>Ph.D Student in Electrical Engineering<br>University of Sao Paulo - USP<br>
Engineering School of Sao Carlos - EESC<br>Department of Electrical Engineering - SEL<br>Intelligent System in Structure Bioinformatics<br><a href="http://laips.sel.eesc.usp.br">http://laips.sel.eesc.usp.br</a><br>Phone: 55 (16) 3373-9366 Ext 229<br>
Curriculum Lattes - <a href="http://lattes.cnpq.br/1025157978990218">http://lattes.cnpq.br/1025157978990218</a><br>Public Profile - <a href="http://br.linkedin.com/pub/rodrigo-faccioli/7/589/a5">http://br.linkedin.com/pub/rodrigo-faccioli/7/589/a5</a><br>
<br><br><div class="gmail_quote">On Mon, May 10, 2010 at 1:57 PM, sonali dhindwal <span dir="ltr"><<a href="mailto:sonali11dhindwal@yahoo.co.in">sonali11dhindwal@yahoo.co.in</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
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Hello All,<br><br>I am new at MD, and i have started doing it few months ago only. I tried to run some simulations but taking all the parameters using some tutorials given online and have not got very good results. <br>Can someone please help in suggesting what is the best way to learn MD using Gromacs in terms of manuals and literature, what should be referred to do a start ?<br>
I am sorry in advance if this query irritates someone, but any kind of help will be highly appreciable.<br>Regards<br><div>--<br>Sonali Dhindwal</div></td></tr></tbody></table><br><br>--<br>
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