<table cellspacing="0" cellpadding="0" border="0" ><tr><td valign="top" style="font: inherit;">Thanks a lot for your replies. I will start reading this and learning MD.<br>I really want to say that this forum is an excellent source of help. <br>Thanks for all your help.<br><br>Regards<br><div>--<br>Sonali Dhindwal</div><br><br>--- On <b>Mon, 10/5/10, Justin A. Lemkul <i><jalemkul@vt.edu></i></b> wrote:<br><blockquote style="border-left: 2px solid rgb(16, 16, 255); margin-left: 5px; padding-left: 5px;"><br>From: Justin A. Lemkul <jalemkul@vt.edu><br>Subject: Re: [gmx-users] Learning MD<br>To: "Discussion list for GROMACS users" <gmx-users@gromacs.org><br>Date: Monday, 10 May, 2010, 10:43 PM<br><br><div class="plainMail"><br><br>sonali dhindwal wrote:<br>> Hello All,<br>> <br>> I am new at MD, and i have started doing it few months ago only. I tried to run some simulations but taking all the parameters using some tutorials given
online and have not got very good results.<br>> Can someone please help in suggesting what is the best way to learn MD using Gromacs in terms of manuals and literature, what should be referred to do a start ?<br>> I am sorry in advance if this query irritates someone, but any kind of help will be highly appreciable.<br><br>The Gromacs manual is a fantastic resource, particularly the introductory chapters.<br><br>Beyond that, have you tried Google? There are a number of great introductory-type pages that discuss some of the more basic aspects of MD. You might also find some help here:<br><br><a href="http://en.wikipedia.org/wiki/Molecular_dynamics#References" target="_blank">http://en.wikipedia.org/wiki/Molecular_dynamics#References</a><br><br>I can attest to several of the books listed there (Allen & Tildesley, Leach, and Schlick) being particularly useful. Beyond that, hopefully a supervisor or colleagues will have some
expertise and can recommend the requisite reading material.<br><br>-Justin<br><br>> Regards<br>> --<br>> Sonali Dhindwal<br>> <br>> <br><br>-- ========================================<br><br>Justin A. Lemkul<br>Ph.D. Candidate<br>ICTAS Doctoral Scholar<br>MILES-IGERT Trainee<br>Department of Biochemistry<br>Virginia Tech<br>Blacksburg, VA<br>jalemkul[at]vt.edu | (540) 231-9080<br><a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br><br>========================================<br>-- gmx-users mailing list <a ymailto="mailto:gmx-users@gromacs.org" href="/mc/compose?to=gmx-users@gromacs.org">gmx-users@gromacs.org</a><br><a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>Please search the archive at <a href="http://www.gromacs.org/search"
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