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<span class="Apple-style-span" style="font-family:Tahoma, Verdana, Arial, sans-serif;color:rgb(68, 68, 68)"><pre style="white-space:normal">Hi again,</pre><pre style="white-space:normal">Sorry, in "REMARK 470" there is:</pre><pre style="white-space:normal"><pre style="white-space:normal">REMARK 470 </pre><pre style="white-space:normal">REMARK 470 MISSING ATOM </pre><pre style="white-space:normal">REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; </pre><pre style="white-space:norma
l">REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; </pre><pre style="white-space:normal">REMARK 470 I=INSERTION CODE): </pre><pre style="white-space:normal">REMARK 470 M RES CSSEQI ATOMS </pre><pre style="white-space:normal">REMARK 470 SER A 2 OG </pre><pre style="white-space:normal">REMARK 470 GLN A 678 CA C O &nbs
p; CB CG CD OE1 NE2 </pre><pre style="white-space:normal">REMARK 470 SER B 2 OG </pre><pre style="white-space:normal">REMARK 470 GLY B 679 CA C O </pre><div>This means there are missing atoms. Is it possible to add these atoms from other residue what are SER and GLN and GLY?( Copy and Paste OG from other SER for example?) I think after EM these are fixed, it is true?</div><div><br></div><div>Thank you</div></pre><pre style="white-space:normal"><br></pre><pre style="white-space:normal">> Hi everyone,<
br><br><br>> I have one question about adding atoms that are missing in residue. This atom is OG in SER amino acid. I don't know how can I add this atom to my residue. If I have to add this atom manually how can I find coordinates of that? Or If there is server or software to do this I will be happy if you suggest me its.> <br><br>There's no automated GROMACS tool, and I haven't used any other particular tool for the task. For just one atom + hydrogen, you're probably fine to guess approximate coordinates and use EM to fix it.<br><br></pre></span>
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