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<DIV><FONT color=#000000 size=2 face=Arial>Dear Gromacs users,</FONT></DIV>
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<DIV><FONT size=2 face=Arial>I have had one of my studied proteins simulated in a 5 ns production.</FONT></DIV>
<DIV><FONT size=2 face=Arial>Now, I wonder how can I get, let's say, 100 coordinates files, each file represent the coordinates of the protein at certain time during the simulation, for example, each 50 ps OR.. What if I want these 100 files to represent the most stable and least energetic conformations of the protein during this 5 ns simulation independent of which time they represent... I know that VMD can be used for that but I am not quite sure how I can do it...</FONT></DIV>
<DIV><FONT size=2 face=Arial></FONT> </DIV>
<DIV><FONT size=2 face=Arial>Any hint or link or tutorial would be fully appreciated...</FONT></DIV>
<DIV><FONT size=2 face=Arial></FONT> </DIV>
<DIV><FONT size=2 face=Arial>Thanks</FONT></DIV>
<DIV><FONT size=2 face=Arial>Hassan Shallal </FONT></DIV>
<DIV><FONT size=2 face=Arial>UOP</FONT></DIV></FONT></DIV></BODY></HTML>