Hello,<br><br>Thank you for your answer. I mean if I need to go back and comment those lines. (if the results are trusted ..actually I forgot to comment the lines..)<br><br><br><br><div class="gmail_quote">On 8 July 2010 23:10, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
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<br>
jojo J wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Helllo,<br>
<br>
I got top file using pdb2gmx but I did not comment unnecessary lines at the end of the file ( no water in my system<br>
). With this top file I energy minimized my system. I wanted to know if I am fine ...?<br>
<br>
</blockquote>
<br></div></div>
Depends on your definition of "fine." Do you mean to ask if you've done the procedure right, or if the results should be trusted, or something else?<br>
<br>
-Justin<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Thank you,<br>
<br>
</blockquote>
<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
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