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<DIV><FONT color=#000000 size=2 face=Arial>Dear Gromacs users,</FONT></DIV>
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<DIV><FONT size=2 face=Arial>This question is much more of a unix/linux scripting issue. Let's say I have 10 pdb files named mt_1.pdb, mt_2.pdb, .....mt_10.pdb.</FONT></DIV>
<DIV><FONT size=2 face=Arial>If I need to energy minimize the 10 pdb files using the same em.mdp and the same mt.top file, how can I create a script for minimizing the 10 files</FONT></DIV>
<DIV><FONT size=2 face=Arial>without me specifying each file for grommp and mdrun on an individual basis, for 10 files it could be fine, but for more files like 100 or 200, this</FONT></DIV>
<DIV><FONT size=2 face=Arial>is quite time consuming and liable for errors? </FONT></DIV>
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<DIV><FONT size=2 face=Arial>Any help of hint is very appreciated </FONT></DIV>
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<DIV><FONT size=2 face=Arial>Hassan</FONT></DIV></BODY></HTML>