You can just delete them in the generated top file.<div><br></div><div>dawei<br><br><div class="gmail_quote">On Fri, Jul 16, 2010 at 10:45 AM, C. Batistakis <span dir="ltr"><<a href="mailto:cbatiss@yahoo.gr">cbatiss@yahoo.gr</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><table cellspacing="0" cellpadding="0" border="0"><tbody><tr><td valign="top" style="font:inherit">Dear all<br><br>According to the manual, pdb2gmx generates all the angles, pairs and dihedrals automatically in a polymer chain. Because I need nothing of them do you know any fast way to avoid this generation?<br>
<br>The only think I found in the manual is to add [ exclusions ] in the .rtp file for whatever I don't want to be generated, but I am wondering if there is any better way.<br><br>Thanks in advance<br>Chrysostomos<br>
</td></tr></tbody></table><br><br>--<br>
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