<table cellspacing="0" cellpadding="0" border="0" ><tr><td valign="top" style="font: inherit;"><DIV id=yiv373330644><SPAN lang=EN>
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<P dir=rtl align=right></SPAN><FONT face="Courier New (Arabic)" size=2><FONT face="Courier New (Arabic)" size=2><SPAN lang=FA><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Hi all,<?xml:namespace prefix = o ns = "urn:schemas-microsoft-com:office:office" /><o:p></o:p></FONT></SPAN>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Hi all</FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3></FONT></SPAN> </DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>I tried to install "gromacs-localp-3.0.2" on Fedora 11.<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>First, I successfully run ./configure:<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><o:p><FONT size=3> </FONT></o:p></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>…………………………………………………………………………………………..<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>…………………………………………………………………………………………..<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>config.status: creating man/Makefile<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>config.status: creating man/man1/Makefile<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>config.status: creating src/config.h<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><o:p><FONT size=3> </FONT></o:p></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>GROMACS / LOCALPRESSURE is ready to compile.<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><o:p><FONT size=3> </FONT></o:p></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>* Binaries and libraries for this host will be installed in<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-spacerun: yes"> </SPAN>/usr/local/gromacs-localp/i686-pc-linux-gnu/bin<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-spacerun: yes"> </SPAN>/usr/local/gromacs-localp/i686-pc-linux-gnu/lib<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-spacerun: yes"> </SPAN>and shared data will placed in<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-spacerun: yes"> </SPAN>/usr/local/gromacs-localp/share<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-spacerun: yes"> </SPAN>(You can set this with --prefix, --exec-prefix and --datadir)<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><o:p><FONT size=3> </FONT></o:p></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>* You are compiling a double precision version of the package -<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-spacerun: yes"> </SPAN>program names will be suffixed with _d to avoid overwriting single<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-spacerun: yes"> </SPAN>precision files. You can override it with --program-suffix<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><o:p><FONT size=3> </FONT></o:p></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><o:p><FONT size=3> </FONT></o:p></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><o:p><FONT size=3> </FONT></o:p></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>But after making make-distclean followed by make command,<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>I am facing this error message:<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><o:p><FONT size=3> </FONT></o:p></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><o:p><FONT size=3> </FONT></o:p></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>……………………………………………………………………………………………………….<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>………………………………………………………………………………………………………<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>cc -DHAVE_CONFIG_H -I. -I. -I../../src<SPAN style="mso-spacerun: yes"> </SPAN>-I../../include -DGMXLIBDIR=\"/usr/local/gromacs-localp/share/top\"<SPAN style="mso-spacerun: yes"> </SPAN>-O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -o mkinl mkinl.o mkinl_declarations.o mkinl_outerloop.o mkinl_innerloop.o mkinl_calcdist.o mkinl_invsqrt.o mkinl_recip.o mkinl_interactions.o metacode.o<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>./mkinl c<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>>>> This is the GROMACS innerloop code generator<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>>>> It will generate double precision C code in file innerc.c<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>>>> Using gromacs invsqrt code<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>>>> Inlining gromacs invsqrt and/or reciprocal code<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>>>> Using normal solvent optimized loops<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>>>> Prefetching coordinates in loops: none<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>>>> Prefetching forces in loops: none<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>>>> Nonthreaded inner loops<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>>>> Vectorizing invsqrt in loops:none<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><o:p><FONT size=3> </FONT></o:p></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress:<SPAN style="mso-spacerun: yes"> </SPAN>1%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress:<SPAN style="mso-spacerun: yes"> </SPAN>2%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress:<SPAN style="mso-spacerun: yes"> </SPAN>3%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress:<SPAN style="mso-spacerun: yes"> </SPAN>5%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress:<SPAN style="mso-spacerun: yes"> </SPAN>6%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress:<SPAN style="mso-spacerun: yes"> </SPAN>7%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress:<SPAN style="mso-spacerun: yes"> </SPAN>8%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 10%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 11%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 12%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 14%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 15%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 16%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 17%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 19%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 20%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 21%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 23%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 24%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 25%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 26%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 28%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 29%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 30%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 32%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 33%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 34%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 35%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 37%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 38%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 39%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 41%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 42%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 43%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 44%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 46%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 47%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 48%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 50%<o:p></o:p></FONT></SPAN></DIV>
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<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 55%<o:p></o:p></FONT></SPAN></DIV>
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<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 60%<o:p></o:p></FONT></SPAN></DIV>
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<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 88%<o:p></o:p></FONT></SPAN></DIV>
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<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 96%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 97%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 98%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Progress: 100%<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>>>> Generated 29303 lines of code in 78 functions<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>(innerc.c may take a while to compile)<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><o:p><FONT size=3> </FONT></o:p></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>source='innerc.c' object='innerc.lo' libtool=yes \<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-tab-count: 1"> </SPAN>depfile='.deps/innerc.Plo' tmpdepfile='.deps/innerc.TPlo' \<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-tab-count: 1"> </SPAN>depmode=gcc3 /bin/sh ../../config/depcomp \<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-tab-count: 1"> </SPAN>/bin/sh ../../libtool --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I../../src<SPAN style="mso-spacerun: yes"> </SPAN>-I../../include -DGMXLIBDIR=\"/usr/local/gromacs-localp/share/top\"<SPAN style="mso-spacerun: yes"> </SPAN>-O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o innerc.lo `test -f innerc.c || echo './'`innerc.c<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include -DGMXLIBDIR=\"/usr/local/gromacs-localp/share/top\" -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c innerc.c -MT innerc.lo -MD -MP -MF .deps/innerc.TPlo -o innerc.o<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>In file included from ../../include/typedefs.h:53,<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-spacerun: yes"> </SPAN>from innerc.c:8:<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>../../include/sysstuff.h:46:2: warning: #ident is a deprecated GCC extension<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>In file included from ../../include/types/graph.h:40,<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-spacerun: yes"> </SPAN>from ../../include/typedefs.h:66,<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-spacerun: yes"> </SPAN>from innerc.c:8:<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>../../include/fatal.h:46:2: warning: #ident is a deprecated GCC extension<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>In file included from ../../include/vec.h:100,<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-spacerun: yes"> </SPAN>from innerc.c:10:<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>../../include/maths.h:46:2: warning: #ident is a deprecated GCC extension<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>In file included from ../../include/vec.h:103,<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3><SPAN style="mso-spacerun: yes"> </SPAN>from innerc.c:10:<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>../../include/macros.h:46:2: warning: #ident is a deprecated GCC extension<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>innerc.c:25018:7: error: invalid suffix "a" on integer constant<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>innerc.c: In function 'inl3302':<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>innerc.c:25018: error: expected ';' before ')' token<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>innerc.c:25018: error: expected statement before ')' token<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>innerc.c:25018: error: expected expression before '=' token<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>innerc.c:27591:7: error: invalid suffix "a" on integer constant<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>innerc.c: In function 'inl3402':<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>innerc.c:27591: error: expected ';' before ')' token<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>innerc.c:27591: error: expected statement before ')' token<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>innerc.c:27591: error: expected expression before '=' token<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>make[3]: *** [innerc.lo] Error 1<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>make[3]: Leaving directory `/home/Yaghmaei/gromacs-localp-3.0.2/src/gmxlib'<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>make[2]: *** [all-recursive] Error 1<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>make[2]: Leaving directory `/home/Yaghmaei/gromacs-localp-3.0.2/src'<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>make[1]: *** [all] Error 2<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>make[1]: Leaving directory `/home/Yaghmaei/gromacs-localp-3.0.2/src'<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>make: *** [all-recursive] Error 1<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><o:p><FONT size=3> </FONT></o:p></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><o:p><FONT size=3> </FONT></o:p></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Could anybody help me ??<o:p></o:p></FONT></SPAN></DIV>
<P class=MsoPlainText dir=ltr style="MARGIN: 0cm 0cm 0pt; DIRECTION: ltr; unicode-bidi: embed; TEXT-ALIGN: left"><SPAN style="FONT-FAMILY: 'Courier New'"><FONT size=3>Kambiz<o:p></o:p></FONT></SPAN></DIV>
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