my header starts as<div><br></div><div><div># g_sas is part of G R O M A C S:</div><div>#</div><div># GROtesk MACabre and Sinister</div><div>#</div><div>@ title "Area per residue"</div><div>@ xaxis label "Residue"</div>
<div>@ yaxis label "Area (nm\S2\N)"</div><div><div>@TYPE xy</div><div> 1 0.846565 0.312334</div><div> 2 0.598 0.189911</div><div> 3 0.837035 0.363443</div><div> 4 1.14936 0.304359</div>
<div> 5 0.630063 0.233607</div><div> 6 0.625571 0.321569</div><div> 7 0.261401 0.240533</div><div> 8 0.0940011 0.0872611</div><div><br></div><div><br></div><div>i`m not able to understand what the second and third column represents....</div>
<div> </div></div><div><br></div><br><div class="gmail_quote">On Fri, Jul 30, 2010 at 4:33 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<div class="im"><br>
<br>
Anitha wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
In the headers file also i didn`t get the answer about those lines....<br>
<br>
</blockquote>
<br></div>
Well, what do they say?<br>
<br>
-Justin<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="im">
On Fri, Jul 30, 2010 at 4:01 PM, Justin A. Lemkul <<a href="mailto:jalemkul@vt.edu" target="_blank">jalemkul@vt.edu</a> <mailto:<a href="mailto:jalemkul@vt.edu" target="_blank">jalemkul@vt.edu</a>>> wrote:<br>
<br>
<br>
<br>
Anitha wrote:<br>
<br>
I executed the following command.<br>
<br>
g_sas -s topol.tpr -f traj.xtc -or resarea.xvg -o area.xvg<br>
xmgrace -nxy resarea.xvg<br>
<br>
<br>
I have chosen the protein group for surface calculation and output.<br>
I get two sets of values: one is bigger (black) than the other<br>
(red).<br>
<br>
I have checked the manual and other sources, but I could not find an<br>
answer about the black and red line. What does red and black<br>
line shows?<br>
<br>
<br>
Read the headers of the .xvg file.<br>
<br>
-Justin<br>
<br>
<br>
-- S.Anitha<br>
<br>
<br>
-- ========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br></div>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> <<a href="http://vt.edu" target="_blank">http://vt.edu</a>> | (540) 231-9080<div class="im"><br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
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<br>
<br>
-- <br>
S.Anitha<br>
<br>
</div></blockquote><div><div></div><div class="h5">
<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>S.Anitha<br><br>
</div>