Hi,<div><br></div><div>in general running in parallel (-j) doesn't help for install. I suggest to use -j only for "make" and not for "make install"</div><div><br></div><div>Roland<br><br><div class="gmail_quote">
On Fri, Jul 30, 2010 at 3:38 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<br>
Hi,<br>
<br>
Thanks to the developers for the release of the 4.5 beta. Unfortunately, I'm having a minor issue getting it to install. My system is Mac OSX 10.5.8 (Intel), gcc 4.0.1, fftw 3.0.1. Installation procedure:<br>
<br>
$ ./configure --prefix=/usr/local/gmx_4.5_beta1 --with-gsl CPPFLAGS="-I/usr/local/fftw/include -I/sw/include" LDFLAGS="-L/usr/local/fftw/lib -L/sw/lib"<br>
<br>
$ make -j 2<br>
<br>
$ sudo make -j 2 install<br>
<br>
Error message:<br>
<br>
Making install in gmxdemo<br>
make[4]: Nothing to be done for `install-exec-am'.<br>
test -z "/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo" || ../../../config/install-sh -c -d "/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo"<br>
test -z "/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo" || ../../../config/install-sh -c -d "/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo"<br>
mkdir: /usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo: File exists<br>
make[4]: *** [install-gmxdemoSCRIPTS] Error 1<br>
make[4]: *** Waiting for unfinished jobs....<br>
/usr/bin/install -c -m 644 cpeptide.pdb '/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo'<br>
make[3]: *** [install-am] Error 2<br>
make[2]: *** [install-recursive] Error 1<br>
make[1]: *** [install-recursive] Error 1<br>
make: *** [install-recursive] Error 1<br>
<br>
<br>
The funny part is that if I re-issue the exact same make install command as above, the process completes. Is the issue related to the duplicate "test -z" lines shown above?<br>
<br>
-Justin<br>
<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
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</font></blockquote></div><br><br clear="all"><br>-- <br>ORNL/UT Center for Molecular Biophysics <a href="http://cmb.ornl.gov">cmb.ornl.gov</a><br>865-241-1537, ORNL PO BOX 2008 MS6309<br>
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