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Hi,<br><br>There might be a way to do this with Gromacs.<br>But I would think a protein is simply a volume (maybe with one attached water layer)<br>for which there is a simple approximation for the hydrodynamic radius in hydrodynamics.<br><br>Berk<br><br>> From: aroberts99163@yahoo.com<br>> To: gmx-users@gromacs.org<br>> Date: Wed, 18 Aug 2010 14:25:26 -0700<br>> Subject: [gmx-users] Is there a way to calculate the hydrodynamic radius using GROMACS?<br>> <br>> Hi, all,<br>> <br>> I was curious, if there is a way to calculate the hydrodynamic radius <br>> of a protein using GROMACS?<br>> <br>> Much appreciated,<br>> Art<br>> <br>> Dr. Arthur Roberts, Ph.D.<br>> University of California, San Diego<br>> Skaggs School of Pharmacy and Pharmaceutical Sciences<br>> 9500 Gilman Drive #0703<br>> La Jolla, CA 92093-0703<br>> <br>> email: aroberts99163@yahoo.com<br>> cell: 206-850-7468<br>> skype=aroberts92122<br>> <br>> <br>> <br>> -- <br>> gmx-users mailing list gmx-users@gromacs.org<br>> http://lists.gromacs.org/mailman/listinfo/gmx-users<br>> Please search the archive at http://www.gromacs.org/search before posting!<br>> Please don't post (un)subscribe requests to the list. Use the <br>> www interface or send it to gmx-users-request@gromacs.org.<br>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br> </body>
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