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<div style="">Make sure your gromacs is the latest version.<br>
If not, update and try again.<br>
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<div style="direction: ltr;" id="divRpF204755"><font size="2" color="#000000" face="Tahoma"><b>From:</b> gmx-users-bounces@gromacs.org [gmx-users-bounces@gromacs.org] on behalf of praba vathy [sumipraba2003@gmail.com]<br>
<b>Sent:</b> Thursday, September 02, 2010 9:06 PM<br>
<b>To:</b> gmx-users@gromacs.org<br>
<b>Subject:</b> [gmx-users] Need help!!!<br>
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<div>Hi, <br>
<br>
I am using simulation for a membrane protein.<br>
So i have downloaded the dppc.pdb along with it's topology files.<br>
I have used the following steps for the simulation (Based on the link:<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/01_pdb2gmx.html" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/01_pdb2gmx.html</a>).<br>
<br>
We have used the commands and steps as described in the above link.<br>
But we have got a fatal error (Atom type C not found) while running this command,
<br>
<br>
grompp -f mini.mdp -c dppc128.gro -p topol_dppc.top -o <a href="http://em.tp" target="_blank">
em.tp</a><br>
<br>
I cant sort out this problem.<br>
Please anybody help me to sort out this problem.<br>
Awaiting for your valuable replies.<br>
<br>
Praba<br>
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