Justin,<br><br>Sorry if you felt insult. <br><br>I was having trouble running the gromacs at that point and therefore turned to mailing in order to get some help. This topic seems to getting unnecessary attention of many, which I certainly did not want. <br>
<br>I later found problem with mpdboot etc ( since this was compiled with mpich2), which I hope to fix tomorrow. <br><br>So, please conclude this topic here. <br><br>Sincerely,<br><br><div class="gmail_quote">On Sun, Sep 12, 2010 at 10:33 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="im"><br>
<br>
manoj singh wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi Chris,<br>
<br>
<br>
Sorry if I have been rude is my response.<br>
<br>
I am new to the Gromacs-4.0. I just thought if some one can not give positive response to the query, that person should not be responding as this prohibits the further response to the topic.<br>
<br>
</blockquote>
<br></div>
There are no such rules here. Everyone is welcome to comment if they have insight or tips. My response was also not what I would call "not positive," rather an effort to genuinely help point you in the right direction. In return, I received an insult. In general, no one on this list will spoon-feed someone a procedure (especially when it seems that the individual has not done their homework) as it simply requires too much time for a simple mailing list.<br>
Let's turn this situation into a learning experience.<br>
<br>
Your first post suggested that you knew nothing about PBS or how to use Gromacs. Based on your later posts, this is obviously not the case. To get an effective response, you should do the following:<br>
<br>
1. Post the script you're trying to use.<br>
2. Post error message you're getting (if any), or otherwise describe (or better yet, cut-and-paste) relevant output from your queuing software that indicates the problem.<br>
3. Understand that if someone suggests and additional resource, don't take it as dismissive. You may simply be asking the wrong question, or perhaps asking the right question in the wrong place. If I simply post the PBS script for use with my cluster, then some unsuspecting user will probably later on stumble across that post, take it out of context, and then blindly assume that it is the only correct way to use Gromacs, and we perpetuate a cycle of confusion.<br>
<br>
For a few more tips:<br>
<br>
<a href="http://www.gromacs.org/Support/Mailing_Lists#Mailing_List_Etiquette" target="_blank">http://www.gromacs.org/Support/Mailing_Lists#Mailing_List_Etiquette</a><br>
<br>
-Justin<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="im">
Again, thanks for your mail and sorry for my any irresponsible post.<br>
<br>
Manoj<br>
<br></div><div class="im">
On Sun, Sep 12, 2010 at 6:25 PM, <<a href="mailto:chris.neale@utoronto.ca" target="_blank">chris.neale@utoronto.ca</a> <mailto:<a href="mailto:chris.neale@utoronto.ca" target="_blank">chris.neale@utoronto.ca</a>>> wrote:<br>
<br>
Manoj,<br>
<br>
to suggest that Justin is being lazy would be to ignore the<br>
hundreds, possibly thousands, of helpful posts that he has made on<br>
the gromacs mailing list to assist users like yourself free of charge.<br>
<br>
In fact, Justin was probably helping you more than you have realized<br>
by pointing out that you can access some of this information in<br>
places other than the gromacs mailing list, and yes, google is one<br>
of those places.<br>
<br>
Chris.<br>
<br>
-- original message --<br>
<br>
Thanks for reminding me the existence of Google.<br>
It must be hard to copy and paste few lines of the PBS script than<br>
advertising the Google.<br>
<br>
On Sun, Sep 12, 2010 at 5:23 PM, Justin A. Lemkul <jalemkul at<br></div><div class="im">
<a href="http://vt.edu" target="_blank">vt.edu</a> <<a href="http://vt.edu" target="_blank">http://vt.edu</a>>> wrote:<br>
<br>
<br>
<br>
manoj singh wrote:<br>
<br>
Thanks for the reply!<br>
<br>
I will be very thankful if you can send me whatever you have.<br>
<br>
I will change that according to my system.<br>
<br>
<br>
If you know enough to make changes, then you probably know<br>
enough to get up<br>
and running. A Google search for "example PBS script" turns up<br>
nearly 4<br>
million results, the first of which contains much of the<br>
necessary basic<br>
information.<br>
<br>
-Justin<br>
<br>
<br>
<br>
-- gmx-users mailing list <a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a><br></div>
<mailto:<a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a>><div class="im"><br>
<a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at<br>
<a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before posting!<br>
Please don't post (un)subscribe requests to the list. Use thewww<br>
interface or send it to <a href="mailto:gmx-users-request@gromacs.org" target="_blank">gmx-users-request@gromacs.org</a><br></div>
<mailto:<a href="mailto:gmx-users-request@gromacs.org" target="_blank">gmx-users-request@gromacs.org</a>>.<div class="im"><br>
Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br>
<br>
<br>
</div></blockquote>
<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
========================================<div class="im"><br>
-- <br>
gmx-users mailing list <a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a><br>
<a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before posting!<br></div>
Please don't post (un)subscribe requests to the list. Use the www interface or send it to <a href="mailto:gmx-users-request@gromacs.org" target="_blank">gmx-users-request@gromacs.org</a>.<div><div></div><div class="h5">
<br>
Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br>
</div></div></blockquote></div><br>