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On 13/10/2010 5:01 PM, Mark Abraham wrote:
<blockquote cite="mid:4CB54B1D.20003@anu.edu.au" type="cite">
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On 13/10/2010 4:55 PM, Sathish wrote:
<blockquote
cite="mid:AANLkTi=OE8mTHS-x__dUMYXix7kxuEH+mUp8mf0fsG_7@mail.gmail.com"
type="cite">Dear Mark,<br>
Thanks for your reply. In my server gromacs installed at
"local/gromacs". I have checked out point 8 as you mentioned. <br>
It was working with this "source /local/gromacs/bin/GMXRC"
command. <br>
</blockquote>
<br>
That's all you need to do, in every shell from which you want to
use GROMACS. Or, put that command in your shell login scripts
(Google for details).<br>
<br>
<blockquote
cite="mid:AANLkTi=OE8mTHS-x__dUMYXix7kxuEH+mUp8mf0fsG_7@mail.gmail.com"
type="cite"> and also tried , entered "local/gromacs/bin" path
and calling to GMXRC but it shows error<br>
<br>
[root@xxx bin]# GMXRC<br>
/local/gromacs/bin/GMXRC: line 35: return: can only `return'
from a function
or
sourced script<br>
/local/gromacs/bin/GMXRC: line 44: CSH:: command not found<br>
/local/gromacs/bin/GMXRC.csh: line 8: syntax error near
unexpected token
`setenv
'<br>
/local/gromacs/bin/GMXRC.csh: line 8: `if (! $?LD_LIBRARY_PATH)
setenv
LD_LIBRAR
Y_PATH ""'<br>
[root@xxx bin]#<br>
</blockquote>
This doesn't work, and shouldn't.<br>
</blockquote>
And the only thing you should be doing as root are "make install"
and "make links" (if you want the latter). Otherwise you'll trash
your system before you know what you've done.<br>
<br>
Mark<br>
<blockquote cite="mid:4CB54B1D.20003@anu.edu.au" type="cite">
<blockquote
cite="mid:AANLkTi=OE8mTHS-x__dUMYXix7kxuEH+mUp8mf0fsG_7@mail.gmail.com"
type="cite"><br>
kindly help me to fix this problem and luck is not working.<br>
</blockquote>
It should, if the "source" command worked.<br>
<br>
Mark<br>
<blockquote
cite="mid:AANLkTi=OE8mTHS-x__dUMYXix7kxuEH+mUp8mf0fsG_7@mail.gmail.com"
type="cite"> <br>
<br>
<br>
<br>
<div class="gmail_quote">On Wed, Oct 13, 2010 at 12:57 PM, Mark
Abraham <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:mark.abraham@anu.edu.au">mark.abraham@anu.edu.au</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt
0.8ex; border-left: 1px solid rgb(204, 204, 204);
padding-left: 1ex;">
<div>
<div class="h5"><br>
<br>
----- Original Message -----<br>
From: Sathish <<a moz-do-not-send="true"
href="mailto:sathisbioinfo@gmail.com" target="_blank">sathisbioinfo@gmail.com</a>><br>
Date: Wednesday, October 13, 2010 14:31<br>
Subject: [gmx-users] Gromacs installation problem @
RHEL5.5 server<br>
To: <a moz-do-not-send="true"
href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a><br>
<br>
<font style="font-style: normal; font-weight: normal;
background-color: rgb(245, 248, 240); font-size:
14px;">> </font>Dear all,<br>
<font style="font-style: normal; font-weight: normal;
background-color: rgb(245, 248, 240); font-size:
14px;">> </font>I have compiled and installed
gromacs 4.5.1 on RHEL5.5 server. I have also installed
openmpi-1.2.8, fftw-3.2.2 and gsl-1.11. After gromacs
4.5.1 installation did make tests and make links.
Finally got message "GROMACS is installed under
/root/software" and "binary executable installed
/usr/local/bin". Utill this am not getting any errors. <br>
<font style="font-style: normal; font-weight: normal;
background-color: rgb(245, 248, 240); font-size:
14px;">> </font> Then i was tried to calling
"luck" but get "command not found".I have searched the
forum it says binary executable not in your path.<br>
<font style="font-style: normal; font-weight: normal;
background-color: rgb(245, 248, 240); font-size:
14px;">> </font>Am installing first time and need
to know PATH is right which i given? Could anybody help
me to solve this problem?<br>
<font style="font-style: normal; font-weight: normal;
background-color: rgb(245, 248, 240); font-size:
14px;">> </font> Advance thanks.. <br>
<br>
</div>
</div>
Check out point 8 of <a moz-do-not-send="true"
href="http://www.gromacs.org/Downloads/Installation_Instructions"
target="_blank">http://www.gromacs.org/Downloads/Installation_Instructions</a><br>
<font color="#888888"><br>
Mark </font><br>
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</blockquote>
</div>
<br>
<br clear="all">
<br>
-- <br>
-- <br>
Regards,<br>
N. Sathishkumar,<br>
<br>
</blockquote>
<br>
</blockquote>
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