Dear Mark,<br> Thanks for your reply. In my server gromacs installed at "local/gromacs". I have checked out point 8 as you mentioned. <br>It was working with this "source /local/gromacs/bin/GMXRC" command. <br>
and also tried , entered "local/gromacs/bin" path and calling to GMXRC but it shows error<br><br>[root@xxx bin]# GMXRC<br>/local/gromacs/bin/GMXRC: line 35: return: can only `return' from a function or sourced script<br>
/local/gromacs/bin/GMXRC: line 44: CSH:: command not found<br>/local/gromacs/bin/GMXRC.csh: line 8: syntax error near unexpected token `setenv '<br>
/local/gromacs/bin/GMXRC.csh: line 8: `if (! $?LD_LIBRARY_PATH) setenv LD_LIBRAR Y_PATH ""'<br>[root@xxx bin]#<br><br>kindly help me to fix this problem and luck is not working.<br>
<br><br><br><br><div class="gmail_quote">On Wed, Oct 13, 2010 at 12:57 PM, Mark Abraham <span dir="ltr"><<a href="mailto:mark.abraham@anu.edu.au">mark.abraham@anu.edu.au</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
<div><div></div><div class="h5"><br><br>----- Original Message -----<br>From: Sathish <<a href="mailto:sathisbioinfo@gmail.com" target="_blank">sathisbioinfo@gmail.com</a>><br>Date: Wednesday, October 13, 2010 14:31<br>
Subject: [gmx-users] Gromacs installation problem @ RHEL5.5 server<br>To: <a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a><br><br><font style="font-style: normal; font-weight: normal; background-color: rgb(245, 248, 240); font-size: 14px;">> </font>Dear all,<br>
<font style="font-style: normal; font-weight: normal; background-color: rgb(245, 248, 240); font-size: 14px;">> </font>I have compiled and installed gromacs 4.5.1 on RHEL5.5 server. I have also installed openmpi-1.2.8, fftw-3.2.2 and gsl-1.11. After gromacs 4.5.1 installation did make tests and make links. Finally got message "GROMACS is installed under /root/software" and "binary executable installed /usr/local/bin". Utill this am not getting any errors. <br>
<font style="font-style: normal; font-weight: normal; background-color: rgb(245, 248, 240); font-size: 14px;">> </font> Then i was tried to calling "luck" but get "command not found".I have searched the forum it says binary executable not in your path.<br>
<font style="font-style: normal; font-weight: normal; background-color: rgb(245, 248, 240); font-size: 14px;">> </font>Am installing first time and need to know PATH is right which i given? Could anybody help me to solve this problem?<br>
<font style="font-style: normal; font-weight: normal; background-color: rgb(245, 248, 240); font-size: 14px;">> </font> Advance thanks.. <br><br></div></div>Check out point 8 of <a href="http://www.gromacs.org/Downloads/Installation_Instructions" target="_blank">http://www.gromacs.org/Downloads/Installation_Instructions</a><br>
<font color="#888888"><br>Mark
</font><br>--<br>
gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>
<a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before posting!<br>
Please don't post (un)subscribe requests to the list. Use the<br>
www interface or send it to <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>
Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br></blockquote></div><br><br clear="all"><br>-- <br>-- <br>Regards,<br>N. Sathishkumar,<br>
<br>