Dear Mark,<br>    <br>         I have one more doubt. How to run &quot;luck&quot;.  If i run luck anywhere its says  command not found.. <br>
my installed and binary directory cant find luck program. how to do? <br>without checking luck shall i start to run demo? <br><br><br><br><div class="gmail_quote">On Wed, Oct 13, 2010 at 3:19 PM, Mark Abraham <span dir="ltr">&lt;<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>&gt;</span> wrote:<br>

<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">

  
    
  
  <div bgcolor="#ffffff" text="#000000"><div class="im">
    On 13/10/2010 5:01 PM, Mark Abraham wrote:
    <blockquote type="cite">
      
      
      On 13/10/2010 4:55 PM, Sathish wrote:
      <blockquote type="cite">Dear Mark,<br>
              Thanks for your reply. In my server gromacs installed at
        &quot;local/gromacs&quot;. I have checked out point 8 as you mentioned. <br>
        It was working with this &quot;source /local/gromacs/bin/GMXRC&quot;
        command. <br>
      </blockquote>
      <br>
      That&#39;s all you need to do, in every shell from which you want to
      use GROMACS. Or, put that command in your shell login scripts
      (Google for details).<br>
      <br>
      <blockquote type="cite"> and also tried , entered  &quot;local/gromacs/bin&quot; path
        and calling to GMXRC but it shows error<br>
        <br>
        [root@xxx bin]# GMXRC<br>
        /local/gromacs/bin/GMXRC: line 35: return: can only `return&#39;
        from a function
        or                                                                             

        sourced script<br>
        /local/gromacs/bin/GMXRC: line 44: CSH:: command not found<br>
        /local/gromacs/bin/GMXRC.csh: line 8: syntax error near
        unexpected token
        `setenv                                                                            

        &#39;<br>
        /local/gromacs/bin/GMXRC.csh: line 8: `if (! $?LD_LIBRARY_PATH)
        setenv
        LD_LIBRAR                                                                            

        Y_PATH &quot;&quot;&#39;<br>
        [root@xxx bin]#<br>
      </blockquote>
      This doesn&#39;t work, and shouldn&#39;t.<br>
    </blockquote></div>
    And the only thing you should be doing as root are &quot;make install&quot;
    and &quot;make links&quot; (if you want the latter). Otherwise you&#39;ll trash
    your system before you know what you&#39;ve done.<br><font color="#888888">
    <br>
    Mark</font><div class="im"><br>
    <blockquote type="cite">
      <blockquote type="cite"><br>
        kindly help me to fix this problem and  luck is not working.<br>
      </blockquote>
      It should, if the &quot;source&quot; command worked.<br>
      <br>
      Mark<br>
      <blockquote type="cite"> <br>
        <br>
        <br>
        <br>
        <div class="gmail_quote">On Wed, Oct 13, 2010 at 12:57 PM, Mark
          Abraham <span dir="ltr">&lt;<a href="mailto:mark.abraham@anu.edu.au" target="_blank">mark.abraham@anu.edu.au</a>&gt;</span>
          wrote:<br>
          <blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
            <div>
              <div><br>
                <br>
                ----- Original Message -----<br>
                From: Sathish &lt;<a href="mailto:sathisbioinfo@gmail.com" target="_blank">sathisbioinfo@gmail.com</a>&gt;<br>
                Date: Wednesday, October 13, 2010 14:31<br>
                Subject: [gmx-users] Gromacs installation problem @
                RHEL5.5 server<br>
                To: <a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a><br>
                <br>
                <font style="font-style: normal; font-weight: normal; background-color: rgb(245, 248, 240); font-size: 14px;">&gt; </font>Dear all,<br>
                <font style="font-style: normal; font-weight: normal; background-color: rgb(245, 248, 240); font-size: 14px;">&gt; </font>I have compiled and installed
                gromacs 4.5.1 on RHEL5.5 server. I have also installed
                openmpi-1.2.8, fftw-3.2.2 and gsl-1.11. After gromacs
                4.5.1 installation did make tests and make links.
                Finally got message &quot;GROMACS is installed under
                /root/software&quot; and  &quot;binary executable installed
                /usr/local/bin&quot;. Utill this am not getting any errors. <br>
                <font style="font-style: normal; font-weight: normal; background-color: rgb(245, 248, 240); font-size: 14px;">&gt; </font> Then i was tried to calling
                &quot;luck&quot; but get &quot;command not found&quot;.I have searched the
                forum it says binary executable not in your path.<br>
                <font style="font-style: normal; font-weight: normal; background-color: rgb(245, 248, 240); font-size: 14px;">&gt; </font>Am installing first time and need
                to know PATH is right which i given? Could anybody help
                me to solve this problem?<br>
                <font style="font-style: normal; font-weight: normal; background-color: rgb(245, 248, 240); font-size: 14px;">&gt; </font> Advance thanks..  <br>
                <br>
              </div>
            </div>
            Check out point 8 of <a href="http://www.gromacs.org/Downloads/Installation_Instructions" target="_blank">http://www.gromacs.org/Downloads/Installation_Instructions</a><br>
            <font color="#888888"><br>
              Mark </font><br>
            --<br>
            gmx-users mailing list    <a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a><br>
            <a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
            Please search the archive at <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a>
            before posting!<br>
            Please don&#39;t post (un)subscribe requests to the list. Use
            the<br>
            www interface or send it to <a href="mailto:gmx-users-request@gromacs.org" target="_blank">gmx-users-request@gromacs.org</a>.<br>
            Can&#39;t post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br>
          </blockquote>
        </div>
        <br>
        <br clear="all">
        <br>
        -- <br>
        -- <br>
        Regards,<br>
        N. Sathishkumar,<br>
        <br>
      </blockquote>
      <br>
    </blockquote>
    <br>
  </div></div>

<br>--<br>
gmx-users mailing list    <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>
<a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before posting!<br>
Please don&#39;t post (un)subscribe requests to the list. Use the<br>
www interface or send it to <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>
Can&#39;t post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br></blockquote></div><br><br clear="all"><br>-- <br>-- <br>Regards,<br>N. Sathishkumar,<br>

<br>