Dear Vitaly<br>rerunning my program take a long time(approximately 12 days),besides I checked my trojectories and it was completed <br><br><div class="gmail_quote">On Sun, Nov 7, 2010 at 9:12 PM, Vitaly Chaban <span dir="ltr"><<a href="mailto:vvchaban@gmail.com">vvchaban@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Did you try to re-run your trajectory? Does the problem persist then?<br>
<div><div></div><div class="h5"><br>
<br>
<br>
> I have a trajectory with 20000 frames.<br>
> i want to separate just 1000 last frames of it in pdb formt and 1000 first<br>
> frames too.<br>
> I entered this command:<br>
> trjconv -f mmm.trr -o nnn.pdb -s lll.tpr -b 800 -e 1000<br>
><br>
> actually my total time is 1000 ps.<br>
> the process was not done completely!<br>
> when I delete -e option it is done completely but the the result file is 0<br>
> byte,then i can not earn anything.<br>
> what is the problem?<br>
><br>
> thanks in advance for your comments<br>
> Mohsen<br>
</div></div><font color="#888888">--<br>
gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>
<a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before posting!<br>
Please don't post (un)subscribe requests to the list. Use the<br>
www interface or send it to <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>
Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br>
</font></blockquote></div><br>