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<div style="">http://biskit.pasteur.fr/install/applications/dssp<br>
<br>
http://oldwww.gromacs.org/pipermail/gmx-users/2009-April/041004.html<br>
<br>
http://www.gromacs.org/Documentation/Gromacs_Utilities/do_dssp?highlight=dssp<br>
<br>
HTH,<br>
<br>
lina<br>
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<div style="direction: ltr;" id="divRpF632648"><font size="2" face="Tahoma" color="#000000"><b>From:</b> gmx-users-bounces@gromacs.org [gmx-users-bounces@gromacs.org] on behalf of ahmet yıldırım [ahmedo047@gmail.com]<br>
<b>Sent:</b> Wednesday, November 10, 2010 10:02 PM<br>
<b>To:</b> Discussion list for GROMACS users<br>
<b>Subject:</b> [gmx-users] DSSP error<br>
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<div>Hi,<br>
<br>
I installed in /usr/local/bin the DSSP program. And I set the environment variable with a command such as “export DSSP=/usr/local/bin/dssp”.<br>
ab@ubuntu:/Desktop/work# do_dssp -s run.tpr -f run.xtc<br>
...<br>
Selected 1: 'Protein'<br>
There are 164 residues in your selected group<br>
Opening library file /usr/share/gromacs/top/ss.map<br>
Reading frame 0 time 0.000 <br>
Back Off! I just backed up dduigjCp to ./#dduigjCp.1#<br>
<br>
-------------------------------------------------------<br>
Program do_dssp, VERSION 4.0.5<br>
Source code file: ../../../../src/tools/do_dssp.c, line: 471<br>
<br>
<b>Fatal error:</b><br>
Failed to execute command: /usr/local/bin/dssp -na dduigjCp ddDsSuzR > /dev/null 2> /dev/null<br>
-------------------------------------------------------<br>
"Jesus Not Only Saves, He Also Frequently Makes Backups." (Myron Bradshaw)<br>
<br>
What should I do?<br>
<br>
Thanks in advance<br>
<br>
-- <br>
Ahmet YILDIRIM<br>
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