Hi,<br><br>Please tell me which step is wrong:(<br><br>1.step-root@ab-desktop:/home/ab/Desktop# tar xvzf dsspcmbi.tar.gz<br>2.step-root@ab-desktop:/home/ab/Desktop/dssp# cp dsspcmbi dssp<br>3.step-root@ab-desktop:/home/ab/Desktop/dssp# mv dssp /usr/local/bin<br>
4.step-root@ab-desktop:/home/ab/Desktop/dssp# export DSSP=/usr/local/bin<br>5.step-ab@ab-desktop:~/Desktop/gromacswork$ do_dssp -s run.tpr -f run.xtc<br><br>Program do_dssp, VERSION 4.0.5<br>Source code file: ../../../../src/tools/do_dssp.<div id=":11z">
c, line: 471<br><br><b>Fatal error:</b><br>Failed to execute command: /usr/local/bin/dssp -na dduigjCp ddDsSuzR &gt; /dev/null 2&gt; /dev/null</div><br><br><br><br><div class="gmail_quote">10 Kasım 2010 16:08 tarihinde #ZHAO LINA# <span dir="ltr">&lt;<a href="mailto:ZHAO0139@e.ntu.edu.sg">ZHAO0139@e.ntu.edu.sg</a>&gt;</span> yazdı:<br>
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<div><a href="http://biskit.pasteur.fr/install/applications/dssp" target="_blank">http://biskit.pasteur.fr/install/applications/dssp</a><br>
<br>
<a href="http://oldwww.gromacs.org/pipermail/gmx-users/2009-April/041004.html" target="_blank">http://oldwww.gromacs.org/pipermail/gmx-users/2009-April/041004.html</a><br>
<br>
<a href="http://www.gromacs.org/Documentation/Gromacs_Utilities/do_dssp?highlight=dssp" target="_blank">http://www.gromacs.org/Documentation/Gromacs_Utilities/do_dssp?highlight=dssp</a><br>
<br>
HTH,<br>
<br>
lina<br>
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<div style="direction: ltr;"><font color="#000000" face="Tahoma" size="2"><b>From:</b> <a href="mailto:gmx-users-bounces@gromacs.org" target="_blank">gmx-users-bounces@gromacs.org</a> [<a href="mailto:gmx-users-bounces@gromacs.org" target="_blank">gmx-users-bounces@gromacs.org</a>] on behalf of ahmet yıldırım [<a href="mailto:ahmedo047@gmail.com" target="_blank">ahmedo047@gmail.com</a>]<br>

<b>Sent:</b> Wednesday, November 10, 2010 10:02 PM<br>
<b>To:</b> Discussion list for GROMACS users<br>
<b>Subject:</b> [gmx-users] DSSP error<br>
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<div>Hi,<br>
<br>
I installed in /usr/local/bin the DSSP program. And I set the environment variable with a command such as &ldquo;export DSSP=/usr/local/bin/dssp&rdquo;.<br>
ab@ubuntu:/Desktop/work# do_dssp -s run.tpr -f run.xtc<br>
...<br>
Selected 1: &#39;Protein&#39;<br>
There are 164 residues in your selected group<br>
Opening library file /usr/share/gromacs/top/ss.map<br>
Reading frame&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 0 time&nbsp;&nbsp;&nbsp; 0.000&nbsp;&nbsp; <br>
Back Off! I just backed up dduigjCp to ./#dduigjCp.1#<br>
<br>
-------------------------------------------------------<br>
Program do_dssp, VERSION 4.0.5<br>
Source code file: ../../../../src/tools/do_dssp.c, line: 471<br>
<br>
<b>Fatal error:</b><br>
Failed to execute command: /usr/local/bin/dssp -na dduigjCp ddDsSuzR &gt; /dev/null 2&gt; /dev/null<br>
-------------------------------------------------------<br>
&quot;Jesus Not Only Saves, He Also Frequently Makes Backups.&quot; (Myron Bradshaw)<br>
<br>
What should I do?<br>
<br>
Thanks in advance<br>
<br>
-- <br>
Ahmet YILDIRIM<br>
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