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On 13/11/2010 1:21 AM, babu gokul wrote:
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<pre>Dear all
I would like to analysis the hydration site near the proteins the one done by
the following paper
"Biophysical Journal Volume 79 December 2000 2966–2974"
I would like to do the analysis the trajectory like this. is there any tool available in gromacs to do this kind of analysis could anyone
help me in this regard. what tool will be useful to analysis this kind of
results.
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<br>
It sounds rather like you're not doing enough of your own work to
"earn" help. :-) It would take someone several minutes to track down
that paper from the information you provided, when providing a URL
to the paper would have been easy and considerate. Then they'd have
to spend some more time reading parts of it to try and work out what
analysis you are talking about, in the hope that it's clear which
one you are talking about. Surely the method description they
provided talks enough about the geometric primitives that you can
provide a quick summary of the requirements with a precise and easy
pointer to further information once you've piqued someone's
interest.<br>
<br>
This may sound like a lot of work for you, but see
<a class="moz-txt-link-freetext" href="http://www.catb.org/%7Eesr/faqs/smart-questions.html">http://www.catb.org/%7Eesr/faqs/smart-questions.html</a><br>
<br>
Mark<br>
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