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I am trying to check some of these issues. <br>thanks for your help <br><br><hr id="stopSpelling">Date: Sat, 20 Nov 2010 03:38:08 +1100<br>From: Mark.Abraham@anu.edu.au<br>To: gmx-users@gromacs.org<br>Subject: Re: [gmx-users] mpdboot and mpirun hangs (not crashing)<br><br>
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On 20/11/2010 2:57 AM, X Rules wrote:
<blockquote cite="mid:BLU125-W7C0C72436348B71694DCFA63A0@phx.gbl">
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Hi,<br>
<br>
I am trying to run my production run with mpirun and this hangs
(basically stop writing any files). The processes continue to run
without any output. <br>
I have to kill and restart which again hangs after some time. <br>
Does anyone have any problems with this?<br>
what I am doing is <br>
<br>
<br>
<font style="" face="Courier New">mpdboot -n 1 -f NODEFILE</font><font style="" face="Courier New"><br>
</font><font style="" face="Courier New"><br>
</font><font style="" face="Courier New">nohup mpirun -np 12
mdrun_mpi -v -deffnm protein-prod &</font><br>
<br>
what could have been going wrong here?? What could I try<br>
</blockquote>
<br>
Probably something about your MPI installation, or perhaps network
file system, is poorly configured, but it's impossible for us to
guess better with the information we have. You should try different
things and see what works and what does not.<br>
<br>
Mark<br>
<br>--
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