ok, but when I type luck it says command not found, where's my mistake?<br><br><div class="gmail_quote">2010/11/24 Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span><br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;"><div><div></div><div class="h5">Quoting Rossella Noschese <<a href="mailto:noschese.rossella@gmail.com">noschese.rossella@gmail.com</a>>:<br>
<br>
> Hi all, I'm trying to install gromacs.4.5.3 on fedora 13.<br>
> I followed the instruction on the website, I completed my make install and<br>
> this was the output:<br>
> GROMACS is installed under /usr/local/gromacs.<br>
> Make sure to update your PATH and MANPATH to find the<br>
> programs and unix manual pages, and possibly LD_LIBRARY_PATH<br>
> or /etc/ld.so.conf if you are using dynamic libraries.<br>
><br>
> Please run "make tests" now to verify your installation.<br>
><br>
> If you want links to the executables in /usr/local/bin,<br>
> you can issue "make links" now.<br>
><br>
> Since I understood I could set my environment later, I directly complete my<br>
> make links.<br>
> Then I added in my .bashrc the line:<br>
> source /usr/local/gromacs/bin/GMXRC.bash<br>
><br>
> and it was added to mi $PATH and also my $MANPATH seems to be right<br>
> (/usr/local/gromacs/share/man:)<br>
><br>
> When I type GMXRC in the shell it comes:<br>
> [Rossella@topolone ~]$ GMXRC<br>
> /usr/local/gromacs/bin/GMXRC: line 35: return: can only `return' from a<br>
> function or sourced script<br>
> /usr/local/gromacs/bin/GMXRC: line 44: CSH:: command not found<br>
> /usr/local/gromacs/bin/GMXRC.csh: line 8: syntax error near unexpected token<br>
> `setenv'<br>
> /usr/local/gromacs/bin/GMXRC.csh: line 8: `if (! $?LD_LIBRARY_PATH) setenv<br>
> LD_LIBRARY_PATH ""'<br>
><br>
> Is there anyone that could help me?<br>
><br>
<br>
</div></div>You don't run GMXRC directly, you have to "source GMXRC," but since you've<br>
already done that in your .bashrc, there's no need to do it again.<br>
<br>
-Justin<br>
<br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
========================================<br>
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