<br><br><div class="gmail_quote">On Wed, Dec 22, 2010 at 11:23 AM, shikha agarwal <span dir="ltr"><<a href="mailto:shikhaiiitabi@gmail.com">shikhaiiitabi@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<div><div></div><div class="h5">I am trying to simulate a theorical model of a membrane protein in explicit<br>
lipid bilayer membrane environment (DMPC or POPC), I have the pdb<br>
files of this protein and membrane , I have to topolies files this<br>
lipids (dmpc.ip or popc.itp).<br>
How we can create merged topology of lipid and protein and do simulation<br>
step by step.<br></div></div></blockquote><div><br></div><div>Do you want to embed the protein in the lipid membrane? For that you can use g_membed. For a step-by-step How to do membrane simulation refer to the link below....</div>
<div><br></div><div><br></div><div><a href="http://www.gromacs.org/Documentation/How-tos/Membrane_Simulations">http://www.gromacs.org/Documentation/How-tos/Membrane_Simulations</a></div><div><br></div><div><br></div><div>
Best Wishes,</div><div><br></div><div><br></div><div>Sarath</div><div><br></div><div><br></div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><div><div class="h5">
Anybody could help ?<br>
thank you very much !<br><br><br></div></div>with regards :<br><font color="#888888">shikha agarwal<br>IIIT-A<br>
</font><br>--<br>
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