<br>hello <br><br><br>I m unable to update the [ molecules ] directive of topol_pope.top .<br><br>grompp -f minim.mdp -c system_inflated.gro -p topol_pope.top -o em1.tpr<br><br><br>Fatal error:<br>number of coordinates in coordinate file (system_inflated.gro, 20782)<br>
does not match topology (topol_pope.top, 37867)<br><br><br><br>this is my .top file <br>; Include chain topologies<br>#include "forcefield.itp"<br>#include "pope.itp"<br><br>; Include water topology<br>
#include "spc.itp"<br><br>; Include ion topologies<br>#include "ions.itp"<br><br>; System specifications<br>[ system ]<br>340-Lipid POPE Bilayer <br><br>[ molecules ]<br>; molecule name nr.<br>POPE 340<br>
SOL 6729<br><br>this is system.gro<br><br>Gnomes, ROck Monsters And Chili Sauce<br> 41229<br> <br>this is sytem_inflated.gro<br><br>What you read here has nothing to do with anything. So you don't have to read it. Thank you.<br>
20782<br><br>but there is 3362 protein atom and 17680 lipid in sytem_inflated.gro then why <a href="http://inflategro.pl">inflategro.pl</a> script is generating wrong total count .<br><br><br><br>help!<br>thank for ur support !<br>
<br>with regards :<br><br>shikha <br><br>