<p>Hi Mohsen,</p>
<p>I think you'll have to get a bit creative with g_traj to get the COMs, followed by either some simple scripting or nifty usage of paste and awk (something like: paste com1.xvg com2.xvg | awk '/^[^@#;]/{print $2-$6, $3-$7, $4-$8}').</p>
<p>Hope it helps,</p>
<p>Tsjerk</p>
<p><blockquote type="cite">On Dec 25, 2010 2:40 PM, "mohsen ramezanpour" <<a href="mailto:ramezanpour.mohsen@gmail.com">ramezanpour.mohsen@gmail.com</a>> wrote:<br><br>Dear All<br>How can we measure the distance between COM of two molecules?of course in vector form!<br>
thanks in advance<br>
<br>--<br>
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