<html><head></head><body><p>Dear All </p><p>I asked this question in Martini's forum, but tile now no answer, so I had to ask it here. excuse me.<br />I did an atomistic peptide simulation. The residues and positions of all atoms in this peptide created by my self, I mean I didn't download the pdb file from <www.pdb.org>. at the end of atomistic simulation I have .pdb and .gro files that show the minimized structure of the peptide. <br /><br />Now I have a question: Can I use the last pdb file for a CG peptide? Can I use atom2cg.awk and seq2itp.pl in this case? <br /><br />Thank you <br />Kargar<br /><br /></p></body></html>