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    On 4/01/2011 11:38 PM, ahmet yıldırım wrote:
    <blockquote
      cite="mid:AANLkTimMoGQuiR8Wv6=zuMqx5kqTW9htnPwouhz=jLgV@mail.gmail.com"
      type="cite">Dear Mark,<br>
      <br>
      I will do by using the g_analyze tool but <span id="result_box"
        class="short_text" lang="en"><span title="Alternatif çevirileri
          görmek için tıklayın" class="hps">I do not know</span> <span
          title="Alternatif çevirileri görmek için tıklayın" class="hps">how
          to use it.<br>
        </span></span></blockquote>
    <br>
    There's a section in Appendix D of the manual for each tool, or you
    can use the -h argument to the tool to get the same information.<br>
    <br>
    Either way, you haven't got the right tool. Hint: it's a "protein
    specific analysis"<br>
    <br>
    Mark<br>
    <br>
    <blockquote
      cite="mid:AANLkTimMoGQuiR8Wv6=zuMqx5kqTW9htnPwouhz=jLgV@mail.gmail.com"
      type="cite"><span id="result_box" class="short_text" lang="en"><span
          title="Alternatif çevirileri görmek için tıklayın" class="hps">
          <br>
          Thanks<br>
          <br>
        </span></span>
      <div class="gmail_quote">2011/1/4 Mark Abraham <span dir="ltr">&lt;<a
            moz-do-not-send="true" href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>&gt;</span><br>
        <blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt
          0.8ex; border-left: 1px solid rgb(204, 204, 204);
          padding-left: 1ex;">
          <div class="im">On 4/01/2011 8:33 PM, ahmet yıldırım wrote:<br>
            <blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt
              0.8ex; border-left: 1px solid rgb(204, 204, 204);
              padding-left: 1ex;">
              Hi,<br>
              <br>
              How can I calculate the percentages (alpha helix, beta
              sheet, coil ...) of secondary structure?<br>
            </blockquote>
            <br>
          </div>
          Look in manual section 7.4 for a suitable tool.<br>
          <br>
          Mark<br>
          <font color="#888888">
            -- <br>
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          </font></blockquote>
      </div>
      <br>
      <br clear="all">
      <br>
      -- <br>
      Ahmet YILDIRIM<br>
    </blockquote>
    <br>
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