Dear Justin and Mark,<br><br>Problem solved.Thanks for your helps<br><br>I copied to the directory /usr/share/gromacs/top it (in.m2p).<br>root@ubuntu:/home/ab/Desktop# cp in.m2p /usr/share/gromacs/top<br><br><div class="gmail_quote">
05 Ocak 2011 13:45 tarihinde Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> yazdı:<br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
<div class="im"><br>
<br>
ahmet yıldırım wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Dear Mark,<br>
<br>
I am using the Gromacs on the Ubuntu for month but have not encountered any problems.I did a search in the file system of Ubuntu. I do not have a GMXLIB folder in a file system.<br>
<br>
What should I do?<br>
<br>
</blockquote>
<br></div>
If you're telling xpm2ps to use in.m2p, that file has to exist somewhere. The error message is telling you that it does not exist in the working directory (i.e., the directory where you're issuing the command), or the standard Gromacs library directory (<a href="http://www.gromacs.org/Documentation/Terminology/Environment_Variables#GMXLIB" target="_blank">http://www.gromacs.org/Documentation/Terminology/Environment_Variables#GMXLIB</a>).<br>
<br>
If you tell any Gromacs tool to use certain input, it has to exist; Gromacs isn't going to magically create all the proper files for you.<br>
<br>
-Justin<br>
<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
05 Ocak 2011 10:42 tarihinde Mark Abraham <<a href="mailto:Mark.Abraham@anu.edu.au" target="_blank">Mark.Abraham@anu.edu.au</a> <mailto:<a href="mailto:Mark.Abraham@anu.edu.au" target="_blank">Mark.Abraham@anu.edu.au</a>>> yazdı:<div class="im">
<br>
<br>
On 5/01/2011 7:37 PM, ahmet yıldırım wrote:<br>
<br>
Dear users,<br>
<br>
I receive the following error when I entered the command "xpm2ps<br>
-f ss.xpm -o ss.eps -di in.m2p"<br>
Fatal error:<br>
Library file in.m2p not found in current dir nor in default<br>
directories.<br>
(You can set the directories to search with the GMXLIB path<br>
variable)<br>
<br>
I am using the Gromacs 4.05 on the Ubuntu 9.1 Operation System.<br>
I installed the Gromacs from Synaptic Package Manager.<br>
I used echo $GMXDATA but it did not show anything. The pdb2gmx,<br>
g_gyrate,...etc files are in the directory /usr/bin/.<br>
The GMXRC file is in the directory<br>
/usr/share/gromacs/shell-specific.<br>
<br>
<br>
Are you following these instructions?<br>
<a href="http://www.gromacs.org/Downloads/Installation_Instructions#Getting_access_to_GROMACS_after_installation" target="_blank">http://www.gromacs.org/Downloads/Installation_Instructions#Getting_access_to_GROMACS_after_installation</a><br>
<br>
Mark<br>
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<br>
<br>
<br>
<br>
-- <br>
Ahmet YILDIRIM<br>
<br>
</div></blockquote>
<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
========================================<div><div></div><div class="h5"><br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>Ahmet YILDIRIM<br>