Hi All,<div>I ran into a problem when running the methanol example in "Getting Started". When I ran "grompp -v", I got the following:</div><div><div> </div><div> Fatal error:</div><div> Atomtype CMET not found</div>
<div><br></div><div>I installed Gromacs 4.5.3 on Ubuntu and planned to learn the software. Now I am stuck. </div><div>Many thanks for your help! I really appreciate it.</div><div><br></div><div>Mao</div><div><br></div><br>
<div class="gmail_quote">On Wed, Jan 5, 2011 at 4:41 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<div class="im"><br>
<br>
Mao Mao wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi All,<br>
I am a new user of Gromacs and Linux. I am using Ubuntu 10.10 and installed Gromacs 4.5.3 following the instructions. When I ran the demo, I found that when I pressed <enter>, the xterm window which is supposed to appear separately just flashed and disappeared immediately. For instance, "the output of the genbox program should appear in a separate xterm window", but when I pressed <enter> the window flashed and disappeared immediately. Is there anything wrong that I need to fix or is that the way it should be?<br>
</blockquote>
<br></div>
It is possible that something is wrong with the demo, but more likely something is wrong with your X window settings. If you're looking for tutorial material, there are far better resources than this simple walkthrough:<br>
<br>
<a href="http://www.gromacs.org/Documentation/Tutorials" target="_blank">http://www.gromacs.org/Documentation/Tutorials</a><br>
<br>
-Justin<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Best,<br>
Mao<br>
<br>
</blockquote>
<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
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