Thanks, <br><br>so LDFLAGS /home/user/gmx<br>and CPPFLAGS /home/user/gmx for example?<br><br><div class="gmail_quote">On Tue, Jan 11, 2011 at 2:19 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;"><div class="im"><br>
<br>
Sergio Manzetti wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Hi Justin, it was a blank ./configure<br>
<br>
<br>
</blockquote>
<br></div>
I don't know why a standard location like /usr/lib isn't be detected as containing the libraries, but you can set LDFLAGS and CPPFLAGS accordingly so that the libraries and headers are found. See the installation instructions for details.<br>
<br>
-Justin<br>
<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;"><div><div></div><div class="h5">
<br>
On Tue, Jan 11, 2011 at 2:03 PM, Justin A. Lemkul <<a href="mailto:jalemkul@vt.edu" target="_blank">jalemkul@vt.edu</a> <mailto:<a href="mailto:jalemkul@vt.edu" target="_blank">jalemkul@vt.edu</a>>> wrote:<br>
<br>
<br>
<br>
Sergio Manzetti wrote:<br>
<br>
Dear users, I have installed FFTW3 successfully, and confirmed<br>
its location using locate:<br>
<br>
<br>
/home/m/Desktop/gromacs-4.5.3/src/mdlib/gmx_fft_fftw3.c<br>
/usr/lib/libfftw3.so.3<br>
/usr/lib/libfftw3.so.3.2.4<br>
/usr/lib/libfftw3_threads.so.3<br>
/usr/lib/libfftw3_threads.so.3.2.4<br>
/usr/lib/libfftw3f.so.3<br>
/usr/lib/libfftw3f.so.3.2.4<br>
/usr/lib/libfftw3f_threads.so.3<br>
/usr/lib/libfftw3f_threads.so.3.2.4<br>
/usr/lib/libfftw3l.so.3<br>
/usr/lib/libfftw3l.so.3.2.4<br>
/usr/lib/libfftw3l_threads.so.3<br>
/usr/lib/libfftw3l_threads.so.3.2.4<br>
/usr/share/doc/libfftw3-3<br>
/usr/share/doc/libfftw3-3/NEWS.gz<br>
/usr/share/doc/libfftw3-3/README<br>
/usr/share/doc/libfftw3-3/README.Debian<br>
/usr/share/doc/libfftw3-3/changelog.Debian.gz<br>
/usr/share/doc/libfftw3-3/changelog.gz<br>
/usr/share/doc/libfftw3-3/copyright<br>
/var/cache/apt/archives/libfftw3-3_3.2.2-1_i386.deb<br>
/var/lib/dpkg/info/libfftw3-3.list<br>
/var/lib/dpkg/info/libfftw3-3.md5sums<br>
/var/lib/dpkg/info/libfftw3-3.postinst<br>
/var/lib/dpkg/info/libfftw3-3.postrm<br>
/var/lib/dpkg/info/libfftw3-3.shlib<br>
<br>
<br>
However, when I try installing Gromacs 4.5.3 the -/configure<br>
step yields:<br>
<br>
configure: error: Cannot find fftw3f library<br>
<br>
<br>
What am I doing incorrectly?<br>
<br>
<br>
Without seeing the command you gave to configure, it's impossible to<br>
say.<br>
<br>
-Justin<br>
<br>
Sergio<br>
<br>
<br>
-- ========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br></div></div>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> <<a href="http://vt.edu" target="_blank">http://vt.edu</a>> | (540) 231-9080<div class="im"><br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
========================================<br>
-- gmx-users mailing list <a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a><br></div>
<mailto:<a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a>><div class="im"><br>
<a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at<br>
<a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before posting!<br>
Please don't post (un)subscribe requests to the list. Use the www<br>
interface or send it to <a href="mailto:gmx-users-request@gromacs.org" target="_blank">gmx-users-request@gromacs.org</a><br></div>
<mailto:<a href="mailto:gmx-users-request@gromacs.org" target="_blank">gmx-users-request@gromacs.org</a>>.<div class="im"><br>
Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br>
<br>
<br>
</div></blockquote><div><div></div><div class="h5">
<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
========================================<br>
-- <br>
gmx-users mailing list <a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a><br>
<a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before posting!<br>
Please don't post (un)subscribe requests to the list. Use the www interface or send it to <a href="mailto:gmx-users-request@gromacs.org" target="_blank">gmx-users-request@gromacs.org</a>.<br>
Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br>
</div></div></blockquote></div><br>