<html><head><style type="text/css"><!-- DIV {margin:0px;} --></style></head><body><div style="font-family:arial,helvetica,sans-serif;font-size:10pt"><div>Hi Tsjerk,<br><br>Ya, it happened with other ff, too.<br>My command line is pdb2gmx -ignh -f Sur.pdb<br>i've browsed through the pdb file and it looks ok...<br><br>joyce<br><br><br></div><div style="font-family: arial,helvetica,sans-serif; font-size: 10pt;"><br><div style="font-family: times new roman,new york,times,serif; font-size: 12pt;"><font face="Tahoma" size="2"><hr size="1"><b><span style="font-weight: bold;">From:</span></b> Tsjerk Wassenaar <tsjerkw@gmail.com><br><b><span style="font-weight: bold;">To:</span></b> Discussion list for GROMACS users <gmx-users@gromacs.org><br><b><span style="font-weight: bold;">Sent:</span></b> Thursday, January 13, 2011 15:31:35<br><b><span style="font-weight: bold;">Subject:</span></b> Re: [gmx-users] pdb2gmx: segmentation fault<br></font><br><p>Hi
Joyce,</p>
<p>Can you post the command line? Does it also happen with other force fields? Is there something notable about the pdb file?</p>
<p>Cheers,</p>
<p>Tsjerk</p>
<p></p><blockquote type="cite">On Jan 13, 2011 7:48 AM, "Kwee Hong" <<a rel="nofollow" ymailto="mailto:jestan1985@yahoo.com" target="_blank" href="mailto:jestan1985@yahoo.com">jestan1985@yahoo.com</a>> wrote:<br><br><div><div style="font-family: arial,helvetica,sans-serif; font-size: 10pt;">
<div>Hi Mark,<br><br>I tried v 4.0.7 and 4.5.1. Both experiencing the same situation.<br>The file is actually saved as pdb file from autodock output using pymol.<br><br>Joyce<br></div><div style="font-family: arial,helvetica,sans-serif; font-size: 10pt;">
<br><div style="font-family: times new roman,new york,times,serif; font-size: 12pt;"><font face="Tahoma" size="2"><hr size="1"><b><span style="font-weight: bold;">From:</span></b> Mark Abraham <<a rel="nofollow" ymailto="mailto:mark.abraham@anu.edu.au" target="_blank" href="mailto:mark.abraham@anu.edu.au">mark.abraham@anu.edu.au</a>><br>
<b><span style="font-weight: bold;">To:</span></b> Discussion list for GROMACS users <<a rel="nofollow" ymailto="mailto:gmx-users@gromacs.org" target="_blank" href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a>><br><b><span style="font-weight: bold;">Sent:</span></b> Thursday, January 13, 2011 13:43:47<br>
<b><span style="font-weight: bold;">Subject:</span></b> Re: [gmx-users] pdb2gmx: segmentation
fault<br></font><p><font color="#500050">
On 01/13/11, Kwee Hong <<a rel="nofollow" ymailto="mailto:jestan1985@yahoo.com" target="_blank" href="mailto:jestan1985@yahoo.com">jestan1985@yahoo.com</a>> wrote:
>
> Hi,
>
> I was trying to generate topolo...</font></p></div></div>
</div><br></div><br>--<br>
gmx-users mailing list <a rel="nofollow" ymailto="mailto:gmx-users@gromacs.org" target="_blank" href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>
<a rel="nofollow" target="_blank" href="http://lists.gromacs.org/mailman/listinfo/gmx-users">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at <a rel="nofollow" target="_blank" href="http://www.gromacs.org/Support/Mailing_Lists/Search">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before posting!<br>
Please don't post (un)subscribe requests to the list. Use the<br>
www interface or send it to <a rel="nofollow" ymailto="mailto:gmx-users-request@gromacs.org" target="_blank" href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>
Can't post? Read <a rel="nofollow" target="_blank" href="http://www.gromacs.org/Support/Mailing_Lists">http://www.gromacs.org/Support/Mailing_Lists</a><br></blockquote>
</div></div>
</div><br></body></html>