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    On 16/01/2011 9:27 PM, Mr Bernard Ramos wrote:
    <blockquote cite="mid:215252.39099.qm@web52705.mail.re2.yahoo.com"
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              <div><font class="Apple-style-span" face="arial" size="2">Dear
                  all,</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">I
                  need help. I am trying to install Gromacs using
                  Cygwin. However, I do not seem to have access to it. I
                  am very new with Cygwin. I just followed the steps
                  provided by the following sites:&nbsp;</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><a class="moz-txt-link-freetext" href="http://machine-phase.blogspot.com/2009/04/how-to-install-gromacs-on-windows-vista.html">http://machine-phase.blogspot.com/2009/04/how-to-install-gromacs-on-windows-vista.html</a>
                  and
                  <a class="moz-txt-link-freetext" href="http://www.gromacs.org/Downloads/Installation_Instructions/Cygwin_HOWTO">http://www.gromacs.org/Downloads/Installation_Instructions/Cygwin_HOWTO</a></font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">but
                  in the end when I type "luck" it returns "command not
                  found".</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">These
                  are the steps I did.&nbsp;</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">1.
                  Downloaded fftw-3.2.2 and gromacs-4.5.3 and saved them
                  in C:\Packages</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">2.
                  After installing cygwin, I changed directory by typing
                  in the following in order to work with fftw-3.2.2</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">cd
                  /cygdrive/c/Packages/fftw-3.2.2</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">and
                  then I typed in</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">./configure
                  --enable-threads --enable-sse w--enable-float</font></div>
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    </blockquote>
    <br>
    Hopefully that extra 'w' is spurious. Actually copying and pasting
    is a good practice.<br>
    <br>
    <blockquote cite="mid:215252.39099.qm@web52705.mail.re2.yahoo.com"
      type="cite">
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              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">followed
                  by</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">make</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">then&nbsp;</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">make
                  install</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">2.
                  I then worked for the gromacs-4.5.3 by typing in</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">cd
                  /cygdrive/c/Packages/gromacs-4.5.3&nbsp;</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">and
                  then&nbsp;</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">./configure
                  --enable-shared LDFLAGS="-L/usr/local/lib"</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">make</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">make
                  install</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">make
                  links</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">make
                  clean</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">3.
                  I typed "luck" after all the procedures above but what
                  I get is "command not found". I am still at
                  /cygdrivec/Packages/gromacs-4.5.3.</font></div>
              <div><font class="Apple-style-span" face="arial" size="2"><br>
                </font></div>
              <div><font class="Apple-style-span" face="arial" size="2">Is
                  this the correct path to run the gromacs?</font></div>
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    </blockquote>
    <br>
    See the official installation instructions regarding getting access
    to GROMACS after installation.<br>
    <br>
    Mark<br>
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