<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body text="#000000" bgcolor="#ffffff">
On 16/01/2011 9:27 PM, Mr Bernard Ramos wrote:
<blockquote cite="mid:215252.39099.qm@web52705.mail.re2.yahoo.com"
type="cite">
<table border="0" cellpadding="0" cellspacing="0">
<tbody>
<tr>
<td style="font: inherit;" valign="top">
<div><font class="Apple-style-span" face="arial" size="2">Dear
all,</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">I
need help. I am trying to install Gromacs using
Cygwin. However, I do not seem to have access to it. I
am very new with Cygwin. I just followed the steps
provided by the following sites: </font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><a class="moz-txt-link-freetext" href="http://machine-phase.blogspot.com/2009/04/how-to-install-gromacs-on-windows-vista.html">http://machine-phase.blogspot.com/2009/04/how-to-install-gromacs-on-windows-vista.html</a>
and
<a class="moz-txt-link-freetext" href="http://www.gromacs.org/Downloads/Installation_Instructions/Cygwin_HOWTO">http://www.gromacs.org/Downloads/Installation_Instructions/Cygwin_HOWTO</a></font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">but
in the end when I type "luck" it returns "command not
found".</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">These
are the steps I did. </font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">1.
Downloaded fftw-3.2.2 and gromacs-4.5.3 and saved them
in C:\Packages</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">2.
After installing cygwin, I changed directory by typing
in the following in order to work with fftw-3.2.2</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">cd
/cygdrive/c/Packages/fftw-3.2.2</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">and
then I typed in</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">./configure
--enable-threads --enable-sse w--enable-float</font></div>
</td>
</tr>
</tbody>
</table>
</blockquote>
<br>
Hopefully that extra 'w' is spurious. Actually copying and pasting
is a good practice.<br>
<br>
<blockquote cite="mid:215252.39099.qm@web52705.mail.re2.yahoo.com"
type="cite">
<table border="0" cellpadding="0" cellspacing="0">
<tbody>
<tr>
<td style="font: inherit;" valign="top">
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">followed
by</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">make</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">then </font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">make
install</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">2.
I then worked for the gromacs-4.5.3 by typing in</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">cd
/cygdrive/c/Packages/gromacs-4.5.3 </font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">and
then </font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">./configure
--enable-shared LDFLAGS="-L/usr/local/lib"</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">make</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">make
install</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">make
links</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">make
clean</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">3.
I typed "luck" after all the procedures above but what
I get is "command not found". I am still at
/cygdrivec/Packages/gromacs-4.5.3.</font></div>
<div><font class="Apple-style-span" face="arial" size="2"><br>
</font></div>
<div><font class="Apple-style-span" face="arial" size="2">Is
this the correct path to run the gromacs?</font></div>
</td>
</tr>
</tbody>
</table>
</blockquote>
<br>
See the official installation instructions regarding getting access
to GROMACS after installation.<br>
<br>
Mark<br>
</body>
</html>