I believe you have to use the trjconv program.<br><br>For more details about it, please read [1].<br><br>[1] <a href="http://manual.gromacs.org/current/online/trjconv.html" target="_blank">http://manual.gromacs.org/current/online/trjconv.html</a><br>

<br>--<br>Rodrigo Antonio Faccioli<br>Ph.D Student in Electrical Engineering<br>University of Sao Paulo - USP<br>Engineering School of Sao Carlos - EESC<br>Department of Electrical Engineering - SEL<br>
Intelligent System in Structure Bioinformatics<br><a href="http://laips.sel.eesc.usp.br" target="_blank">http://laips.sel.eesc.usp.br</a><br>Phone: 55 (16) 3373-9366 Ext 229<br>Curriculum Lattes - <a href="http://lattes.cnpq.br/1025157978990218" target="_blank">http://lattes.cnpq.br/1025157978990218</a><br>

Public Profile - <a href="http://br.linkedin.com/pub/rodrigo-faccioli/7/589/a5" target="_blank">http://br.linkedin.com/pub/rodrigo-faccioli/7/589/a5</a><br>
<br><br><div class="gmail_quote">2011/1/19 ahmet yıldırım <span dir="ltr">&lt;<a href="mailto:ahmedo047@gmail.com" target="_blank">ahmedo047@gmail.com</a>&gt;</span><br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">

Dear users,<br><br>Which the file should I use to visualize (using pymol) the final structure after the simulation finish?<br><br>Thanks<br clear="all"><font color="#888888"><br>-- <br>Ahmet YILDIRIM<br>
</font><br>--<br>
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