Hi,<br><br>Yes, g_membed is the right tool for you. Please read the paper Wolf et al, J Comp Chem, 31 (2010) 2169-2174. You will find a detailed description of the insertion method and a quick manual. It will save you a lot of headache.<br>
<br>Regards,<br>Christopher<br><br><div class="gmail_quote">2011/1/24 Mohana lakshmi <span dir="ltr"><<a href="mailto:mohanaa.bioinfo@gmail.com">mohanaa.bioinfo@gmail.com</a>></span><br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Dear all<br><br> I am trying to run simulation of transmembrane protein, i am looking for better ways to setup protein with lipid membrane. initially i used VMD to insert protein with lipid membrane but it did not come out well, i got errors while running position restraint. i read about g_membed tool in gromacs, is it helpful for setting up transmembrane proteins also? Is there any other better ways to insert protein perfectly into the membrane? Please help me to overcome this problem.....<br>
<br><br><br>Thanks and regards<br><font color="#888888">-- <br><br><br>Mohanalakshmi N<input type="hidden"><input type="hidden"><div></div><br>
</font><br>--<br>
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