Dear Tsjerk,<br><br>Thank you. Problem solved.<br>g_rms -s em.tpr -f run.trr -o rmsd.xvg <br>xmgrace rmsd.xvg<br><br><div class="gmail_quote">25 Ocak 2011 14:51 tarihinde Tsjerk Wassenaar <span dir="ltr"><<a href="mailto:tsjerkw@gmail.com">tsjerkw@gmail.com</a>></span> yazdı:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">Hi Ahmet,<br>
<br>
That sort of indicates that the file is not there, doesn't it?<br>
Maybe you're not doing what you expect to be doing, or doing it somewhere else.<br>
<br>
Cheers,<br>
<br>
Tsjerk<br>
<br>
<br>
2011/1/25 ahmet yıldırım <<a href="mailto:ahmedo047@gmail.com">ahmedo047@gmail.com</a>>:<br>
<div><div></div><div class="h5">> Dear users,<br>
><br>
> g_rms -s em.tpr -f run.xtc<br>
> Select group for least squares fit:<br>
> Selected 2: 'Protein-H'<br>
> Select group for RMSD calculation<br>
> Selected 2: 'Protein-H'<br>
><br>
> I didn't had such a problem in other samples. But now, I have the error as<br>
> the following:<br>
><br>
> Program g_rms, VERSION 4.5.3<br>
> Source code file: gmxfio.c, line: 519<br>
><br>
> Can not open file:<br>
> run.xtc<br>
><br>
> --<br>
> Ahmet YILDIRIM<br>
><br>
</div></div>> --<br>
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><br>
<br>
<br>
<br>
--<br>
Tsjerk A. Wassenaar, Ph.D.<br>
<br>
post-doctoral researcher<br>
Molecular Dynamics Group<br>
* Groningen Institute for Biomolecular Research and Biotechnology<br>
* Zernike Institute for Advanced Materials<br>
University of Groningen<br>
The Netherlands<br>
<font color="#888888">--<br>
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</font></blockquote></div><br><br clear="all"><br>-- <br>Ahmet YILDIRIM<br>