Thanks very much, Dr. Kutzner! <br><br><div class="gmail_quote">On Tue, Feb 1, 2011 at 9:14 PM, Carsten Kutzner <span dir="ltr"><<a href="mailto:ckutzne@gwdg.de">ckutzne@gwdg.de</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
Hi Vigneshwar,<br>
<br>
the problem is fixed now in the release-4-0-patches branch.<br>
<font color="#888888"><br>
Carsten<br>
</font><div><div></div><div class="h5"><br>
<br>
On Feb 1, 2011, at 2:00 PM, Carsten Kutzner wrote:<br>
<br>
> Hi,<br>
><br>
> apparently this bug fix made it to 4.5, but not to 4.0.<br>
> I will apply the fix also there.<br>
><br>
> Carsten<br>
><br>
> On Feb 1, 2011, at 1:58 PM, Justin A. Lemkul wrote:<br>
><br>
>><br>
>><br>
>> Vigneshwar Ramakrishnan wrote:<br>
>>> Dear All,<br>
>>> I am using the gromacs 4.0.7 version and I was trying to calculate the momentum autocorrelation function by using the -m flag. However, I get a segmentation fault as follows:<br>
>>> trn version: GMX_trn_file (double precision)<br>
>>> Reading frame 0 time 0.000 Segmentation fault<br>
>>> When I don't use the -m option, I have no problem.<br>
>>> Upon searching the userslist, I found this thread: <a href="http://lists.gromacs.org/pipermail/gmx-users/2010-October/054813.html" target="_blank">http://lists.gromacs.org/pipermail/gmx-users/2010-October/054813.html</a> and a patch, but I don't find any related bugs reported elsewhere. So, I am just wondering if I sould go ahead and use the patch or if there could be something else that is wrong. Will appreciate any kind of pointers.<br>
>><br>
>> Either apply the patch or upgrade to a newer version of Gromacs that contains this bug fix.<br>
>><br>
>> -Justin<br>
>><br>
>>> Sincerely, Vignesh<br>
>>> --<br>
>>> R.Vigneshwar<br>
>>> Graduate Student,<br>
>>> Dept. of Chemical & Biomolecular Engg,<br>
>>> National University of Singapore,<br>
>>> Singapore<br>
>>> "Strive for Excellence, Never be satisfied with the second Best!!"<br>
>>> I arise in the morning torn between a desire to improve the world and a desire to enjoy the world. This makes it hard to plan the day. (E.B. White)<br>
>><br>
>> --<br>
>> ========================================<br>
>><br>
>> Justin A. Lemkul<br>
>> Ph.D. Candidate<br>
>> ICTAS Doctoral Scholar<br>
>> MILES-IGERT Trainee<br>
>> Department of Biochemistry<br>
>> Virginia Tech<br>
>> Blacksburg, VA<br>
>> jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
>> <a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
>><br>
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><br>
><br>
> --<br>
> Dr. Carsten Kutzner<br>
> Max Planck Institute for Biophysical Chemistry<br>
> Theoretical and Computational Biophysics<br>
> Am Fassberg 11, 37077 Goettingen, Germany<br>
> Tel. +49-551-2012313, Fax: +49-551-2012302<br>
> <a href="http://www.mpibpc.mpg.de/home/grubmueller/ihp/ckutzne" target="_blank">http://www.mpibpc.mpg.de/home/grubmueller/ihp/ckutzne</a><br>
><br>
><br>
><br>
><br>
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<br>
--<br>
Dr. Carsten Kutzner<br>
Max Planck Institute for Biophysical Chemistry<br>
Theoretical and Computational Biophysics<br>
Am Fassberg 11, 37077 Goettingen, Germany<br>
Tel. +49-551-2012313, Fax: +49-551-2012302<br>
<a href="http://www.mpibpc.mpg.de/home/grubmueller/ihp/ckutzne" target="_blank">http://www.mpibpc.mpg.de/home/grubmueller/ihp/ckutzne</a><br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>R.Vigneshwar<br>Graduate Student,<br>Dept. of Chemical & Biomolecular Engg,<br>National University of Singapore,<br>Singapore<br><br>"Strive for Excellence, Never be satisfied with the second Best!!"<br>
<br>I arise in the morning torn between a desire to improve the world and a desire to enjoy the world. This makes it hard to plan the day. (E.B. White)<br>