Sorry to ask this question but setting the gen_vel=yes and gen_seed = -1 will eventually lead to different simulation and thus different simulated structures ?? .. and after completing one set of simulation with this paramter and 3ns time .. do i have to repeat it some 3 or more times ??.... pls comment.. as I am going to start simulation with these parameters.<br>
<br><div class="gmail_quote">On Wed, Feb 2, 2011 at 5:27 AM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<div class="im"><br>
<br>
bharat gupta wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Thanks for such a detailed reply to my queries .. But conducting a 50ns simulation will take time ... so i want to conduct independent simulation and for that I searched some threads but was not able to get the proper description and method... if u can guide me through an appropriate link .. it would be much more helpful .. <br>
</blockquote>
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Each simulation begins with the assignment of random velocities (gen_vel = yes). Specify different values of gen_seed (or leave it set to -1) to get different velocities each time.<br><font color="#888888">
<br>
-Justin</font><div><div></div><div class="h5"><br>
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Justin A. Lemkul<br>
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Department of Biochemistry<br>
Virginia Tech<br>
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jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>Bharat<br>Ph.D. Candidate<br>Room No. : 7202A, 2nd Floor<br>Biomolecular Engineering Laboratory<br>Division of Chemical Engineering and Polymer Science<br>Pusan National University<br>
Busan -609735<br>South Korea<br>Lab phone no. - +82-51-510-3680, +82-51-583-8343<div>Mobile no. - 010-5818-3680<br>E-mail : <a href="mailto:monu46010@yahoo.com" target="_blank">monu46010@yahoo.com</a></div><br>