<p>Hi Mohsen,</p>
<p>So you want to have a topology with all atoms for use in a united atom force field? Seems a bit awkward... PRODRG will only include polar hydrogens, in accordance with the GROMOS force field. It won't be a particular trustworthy topology, though, but you've probably caught the words of caution expressed regularly on this list.</p>
<p>Cheers,</p>
<p>Tsjerk</p>
<p><blockquote type="cite">On Feb 6, 2011 9:42 AM, "mohsen ramezanpour" <<a href="mailto:ramezanpour.mohsen@gmail.com">ramezanpour.mohsen@gmail.com</a>> wrote:<br><br>Dear All<br><br>I want to generate a topology file in 43A1 force field for a small molecule.<br>
Of course I want one which contains all hydrogens in that.<br>PRODRG doesn't generate like this.do you know another server with these conditions?<br>
<br>Thanks in advance<br><font color="#888888">Mohsen<br>
</font><br>--<br>
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