<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta content="text/html; charset=UTF-8" http-equiv="Content-Type" />
<title></title>
</head>
<body>
<p style="margin: 0px;">Yes I would recommend acpype. <span><br />
</span></p>
<div style="margin: 5px 0px 5px 0px;">
On February 9, 2011 at 9:42 AM jorge_quintero@ciencias.uis.edu.co wrote:<br />
<br />
> I think that is better to use antechamber tools.<br />
><br />
><br />
> > On 10/02/2011 3:40 AM, mohsen ramezanpour wrote:<br />
> >> Dear Users<br />
> >><br />
> >> I am using PRODRG to make topology for my drug<br />
> >> It addes Hydrogenes but in wrong way.<br />
> >> My Nitrogen atom is bonded to 2 Carbos,<br />
> >> and PRODRG addes 2 Hydrogenes to it .<br />
> >> Please let me know how can I do.<br />
> >> Thanks in advance<br />
> ><br />
> > This is not really the forum to get help about that. You need to read<br />
> > how to PRODRG needs input, and supply something it can deal with. Then<br />
> > do a whole bunch more work testing what it produced.<br />
> ><br />
> > Mark<br />
> > --<br />
> > gmx-users mailing list    gmx-users@gromacs.org<br />
> > http://lists.gromacs.org/mailman/listinfo/gmx-users<br />
> > Please search the archive at<br />
> > http://www.gromacs.org/Support/Mailing_Lists/Search before posting!<br />
> > Please don't post (un)subscribe requests to the list. Use the<br />
> > www interface or send it to gmx-users-request@gromacs.org.<br />
> > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists<br />
> ><br />
><br />
><br />
> --<br />
> Jorge R. Quintero<br />
> Químico<br />
> Universidad Industrial de Santander<br />
> Bucaramanga, Santander - Colombia<br />
><br />
> --<br />
> gmx-users mailing list    gmx-users@gromacs.org<br />
> http://lists.gromacs.org/mailman/listinfo/gmx-users<br />
> Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!<br />
> Please don't post (un)subscribe requests to the list. Use the<br />
> www interface or send it to gmx-users-request@gromacs.org.<br />
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists<br />
>
</div>
<p style="margin: 0px;"> </p>
<p style="font-family: monospace; white-space: nowrap; margin: 5px 0px 5px 0px;">TJ Mustard<br />
Email: mustardt@onid.orst.edu</p>
</body>
</html>