Making all in include
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Making all in .
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Making all in types
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Making all in thread_mpi
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Making all in atomic
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Making all in src
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Making all in gmxlib
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Making all in nonbonded
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Making all in nb_kernel_x86_64_sse
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Making all in selection
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Making all in thread_mpi
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Making all in gmx_blas
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Making all in mdlib
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/bin/bash ../../libtool --tag=CC   --mode=link cc   -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -msse2 -funroll-all-loops -std=gnu99 -pthread -I./include -no-undefined -version-info 6:0:0 -lfftw3f   -L/home/majid/user/soft/fftw/lib   -o libmd.la -rpath /home/majid/user/soft/gromacs/lib calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_box.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo force.lo forcerec.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo genborn.lo genborn_sse2_single.lo genborn_sse2_double.lo genborn_allvsall.lo genborn_allvsall_sse2_single.lo genborn_allvsall_sse2_double.lo gmx_qhop_parm.lo gmx_qhop_xml.lo groupcoord.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo tpi.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo fft5d.lo gmx_wallcycle.lo qm_gaussian.lo qm_mopac.lo qm_gamess.lo gmx_fft_fftw2.lo gmx_fft_fftw3.lo gmx_fft_fftpack.lo gmx_fft_mkl.lo qm_orca.lo mdebin_bar.lo ../gmxlib/libgmx.la	 -lnsl -lm  
cc  -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o .libs/coupling.o .libs/domdec.o .libs/domdec_box.o .libs/domdec_con.o .libs/domdec_network.o .libs/domdec_setup.o .libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/force.o .libs/forcerec.o .libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o .libs/perf_est.o .libs/genborn.o .libs/genborn_sse2_single.o .libs/genborn_sse2_double.o .libs/genborn_allvsall.o .libs/genborn_allvsall_sse2_single.o .libs/genborn_allvsall_sse2_double.o .libs/gmx_qhop_parm.o .libs/gmx_qhop_xml.o .libs/groupcoord.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o .libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o .libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o .libs/tables.o .libs/tgroup.o .libs/tpi.o .libs/update.o .libs/vcm.o .libs/vsite.o .libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/fft5d.o .libs/gmx_wallcycle.o .libs/qm_gaussian.o .libs/qm_mopac.o .libs/qm_gamess.o .libs/gmx_fft_fftw2.o .libs/gmx_fft_fftw3.o .libs/gmx_fft_fftpack.o .libs/gmx_fft_mkl.o .libs/qm_orca.o .libs/mdebin_bar.o  -Wl,--rpath -Wl,/home/majid/user/down/gromacs/src/gmxlib/.libs -Wl,--rpath -Wl,/home/majid/user/soft/gromacs/lib /home/majid/user/soft/fftw/lib/libfftw3f.a -L/home/majid/user/soft/fftw/lib ../gmxlib/.libs/libgmx.so -lnsl -lm  -msse2 -pthread -Wl,-soname -Wl,libmd.so.6 -o .libs/libmd.so.6.0.0
/usr/bin/ld: /home/majid/user/soft/fftw/lib/libfftw3f.a(mapflags.o): relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC
/home/majid/user/soft/fftw/lib/libfftw3f.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[3]: *** [libmd.la] Error 1
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make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/majid/user/down/gromacs/src'
make: *** [all-recursive] Error 1