<html><head><style type="text/css"><!-- DIV {margin:0px;} --></style></head><body><div style="font-family:'times new roman', 'new york', times, serif;font-size:12pt"><div>So, I installed the development package for x-window-system, and reinstalled both fftw, and gromacs, and now everything seems fine. I do see the animation after running demo.</div><div><br></div><div>Thanks,<br>Majid</div><div style="font-family:times new roman, new york, times, serif;font-size:12pt"><br><div style="font-family:times new roman, new york, times, serif;font-size:12pt"><font size="2" face="Tahoma"><hr size="1"><b><span style="font-weight: bold;">From:</span></b> Mark Abraham <Mark.Abraham@anu.edu.au><br><b><span style="font-weight: bold;">To:</span></b> Discussion list for GROMACS users <gmx-users@gromacs.org><br><b><span style="font-weight: bold;">Sent:</span></b> Mon, February 14, 2011 9:39:12 PM<br><b><span style="font-weight: bold;">Subject:</span></b> Re:
[gmx-users] Gromacs Installation<br></font><br>
<title></title>
On 15/02/2011 4:35 PM, majid hasan wrote:
<blockquote type="cite">
<div style="font-family:times new roman, new york, times, serif;font-size:12pt;">
<div>Okay, I'll do this. I have also realized after browsing
through config.log, that Xlib.h is absent. Where do I get it,
I want it to run ngmx.<br>
</div>
</div>
</blockquote>
<br>
You will need the X windowing system installed, and probably the
associated "devel" packages. Use your distribution's package
manager.<br>
<br>
Mark<br>
<br>
<blockquote type="cite">
<div style="font-family:times new roman, new york, times, serif;font-size:12pt;">
<div><br>
Thanks,<br>
Majid<br>
</div>
<div style="font-family:times new roman, new york, times, serif;font-size:12pt;"><br>
<div style="font-family:times new roman, new york, times, serif;font-size:12pt;"><font face="Tahoma" size="2">
<hr size="1"><b><span style="font-weight:bold;">From:</span></b>
ZHAO Lina <a rel="nofollow" class="moz-txt-link-rfc2396E" ymailto="mailto:lnzhao99@gmail.com" target="_blank" href="mailto:lnzhao99@gmail.com"><lnzhao99@gmail.com></a><br>
<b><span style="font-weight:bold;">To:</span></b>
Discussion list for GROMACS users
<a rel="nofollow" class="moz-txt-link-rfc2396E" ymailto="mailto:gmx-users@gromacs.org" target="_blank" href="mailto:gmx-users@gromacs.org"><gmx-users@gromacs.org></a><br>
<b><span style="font-weight:bold;">Sent:</span></b> Mon,
February 14, 2011 9:07:15 PM<br>
<b><span style="font-weight:bold;">Subject:</span></b>
Re: [gmx-users] Gromacs Installation<br>
</font><br>
"clean" reinstallation.<br>
<br>
make uninstall<br>
make distclean<br>
rm -r <the untar one> <br>
<br>
from source re-install it again.<br>
<br>
lina<br>
<br>
<div class="gmail_quote">On Tue, Feb 15, 2011 at 12:39 PM,
majid hasan <span dir="ltr"><<a rel="nofollow" ymailto="mailto:pu_majidhasan@yahoo.com" target="_blank" href="mailto:pu_majidhasan@yahoo.com">pu_majidhasan@yahoo.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="border-left:1px solid rgb(204, 204, 204);margin:0pt 0pt 0pt 0.8ex;padding-left:1ex;">
<div>
<div style="font-size:12pt;">
<div>Okay. Actually, second time, I over-worte the
first installation. I mean I didn't uninstall the
first one, I just ran the whole process again
starting from fftw$./configure. I am not sure if
that is all right, I just did it to find out the
problem. In the third attempt (without issuing
--enable-shared anywher), I again over-wrote the
gromacs installation files, and this went well. It
worked, but I don't know why?</div>
<div><br>
</div>
<div>Best,</div>
<div>Majid</div>
<div style="font-family:times new roman, new york, times, serif;font-size:12pt;"><br>
<div style="font-family:times new roman, new york, times, serif;font-size:12pt;"><font face="Tahoma" size="2">
<hr size="1">
<b><span style="font-weight:bold;">From:</span></b>
ZHAO Lina <<a rel="nofollow" ymailto="mailto:lnzhao99@gmail.com" target="_blank" href="mailto:lnzhao99@gmail.com">lnzhao99@gmail.com</a>>
<div class="im"><br>
<b><span style="font-weight:bold;">To:</span></b>
Discussion list for GROMACS users <<a rel="nofollow" ymailto="mailto:gmx-users@gromacs.org" target="_blank" href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a>><br>
</div>
<b><span style="font-weight:bold;">Sent:</span></b>
Mon, February 14, 2011 8:04:38 PM
<div class="im"><br>
<b><span style="font-weight:bold;">Subject:</span></b>
Re: [gmx-users] Gromacs Installation<br>
</div>
</font>
<div class="im">
<br>
You are right, it's relevant to the shared
libs.<br>
but I don't know why you failed in the second
attempt if you did a clean reinstallation.<br>
<br>
lina<br>
<br>
<br>
</div>
</div>
</div>
<div><br>
</div>
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