<pre>Im not quite sure if this is the right place to analyze, but a bit before the part in the config.log where it states the error of "cannot compuete sizeof (off_t)", there is this:<br><br>configure:25048: checking size of off_t<br>
configure:25053: /usr/local/bin/mpicc -o conftest -O3 -fomit-frame-pointer -fin<br>line-functions -Wall -Wno-unused -msse2 -funroll-all-loops -std=gnu99 -I/usr/loc<br>al/include -L/usr/local/lib conftest.c -lnsl -lm >&5<br>
configure:25053: $? = 0<br>configure:25053: ./conftest<br>./conftest: error while loading shared libraries: libmpi.so.0: cannot open share<br>d object file: No such file or directory<br>configure:25053: $? = 127<br>configure: program exited with status 127<br>
configure: failed program was:<br>| /* confdefs.h */<br>| #define PACKAGE_NAME "gromacs"<br>| #define PACKAGE_TARNAME "gromacs"<br>| #define PACKAGE_VERSION "4.5.3"<br>| #define PACKAGE_STRING "gromacs 4.5.3"<br>
| #define PACKAGE_BUGREPORT "<a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a>"<br>| #define PACKAGE_URL ""<br>| #define PACKAGE "gromacs"<br>| #define VERSION "4.5.3"<br>
| #define GMX_SOFTWARE_INVSQRT /**/<br>| #define GMX_QMMM_GAUSSIAN /**/<br><br>Also before this there a multiple chunks of such<br><br>configure:25019: $? = 0<br>configure:25019: ./conftest<br>./conftest: error while loading shared libraries: libmpi.so.0: cannot open share<br>
d object file: No such file or directory<br>configure:25019: $? = 127<br>configure: program exited with status 127<br>configure: failed program was:<br>| /* confdefs.h */<br><br>parts all over the place.<br><br><br>It seems like I am missing some files somewhere?<br>
<br><br>On Feb 20, 2011, at 9:30 PM, Justin Kat wrote:<br><br>><i> Dear experts,<br></i>><i> <br></i>><i> I am still unable to overcome this error during the configuration:<br></i>><i> <br></i>><i> configure: error: cannot compute sizeof (off_t)<br>
</i>><i> See `config.log' for more details.<br></i>So what does config.log say about "cannot compute sizeof (off_t) ?"<br><br>Carsten<br><br>><i> <br></i>><i> I came across this thread with the exact same setup as I have: <br>
</i>><i> <br></i>><i> <a href="http://lists.gromacs.org/pipermail/gmx-users/2011-February/058369.html">http://lists.gromacs.org/pipermail/gmx-users/2011-February/058369.html</a><br></i>><i> <br></i>><i> I have tried uninstalling openmpi 1.4.4 and installing the more stable openmpi1.4.3 but I am still experiencing the same error.<br>
</i>><i> <br></i>><i> ./configure --enable-mpi --program-suffix=_mpi MPICC=/usr/local/bin/mpicc --with-fft=fftw3<br></i>><i> <br></i>><i> I have also tried to explicitly provide the path to mpicc as above but it still gives me the same error.<br>
</i>><i> <br></i>><i> This may or may not be relevant but at the end of the config.log there is also this line:<br></i>><i> <br></i>><i> configure: exit 77<br></i>><i> <br></i>><i> Does that mean anything?<br>
</i>><i> <br></i>><i> Any help at all is appreciated!<br></i>><i> <br></i>><i> Thanks,<br></i>><i> Justin--<br></i>><i> gmx-users mailing list <a href="http://lists.gromacs.org/mailman/listinfo/gmx-users">gmx-users at gromacs.org</a><br>
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