<DIV>Hello all</DIV>
<DIV> I obtained a top file after running the "amb2gmx.pl" script,but I feel some errors in this top file.</DIV>
<DIV>The functype of the [dihedral] is 3 in this top file,but the [pairs] part aslo presence in it. And the</DIV>
<DIV>manual is point that "with the Ryckaert-Bellemans potential the 1-4 interactions must be excluded<BR>from the non-bonded list." So I think this top file is incorrect?</DIV>
<DIV> Force field is amber03 in gmx4.5.1,ligand is disaccharide.</DIV>
<DIV>Thanks !</DIV>
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