<br /><br /><span>On 03/01/11, <b class="name">sakthi kumaran </b> <persakthi@gmail.com> wrote:</span><blockquote cite="mid:AANLkTimWTfv-7kBAdX0C3n+9Wo8Mw6kuUjzacP+Rmfd-@mail.gmail.com" class="iwcQuote" style="border-left: 1px solid rgb(0, 0, 255); padding-left: 13px; margin-left: 0pt;" type="cite"><div class="mimepart text html"><div>Sorry for making my statement unclear. </div>
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<div>I copied the tutor folder to desktop and tried to run it from there. But when I entered the grompp -v command as mentioned in the manual, the .tdr file is not getting created. So without the .tdr files the successive commands are not working.</div></div></blockquote><br />GROMACS uses a **.tpr** file format. You need to get your terminology right, or things will be even more frustrating for you...<br /><br />What *did* happen when you tried to run grompp? Copy and paste something relevant from your terminal window. Please go and read http://www.gromacs.org/Support like I suggested last time.<br /> <blockquote cite="mid:AANLkTimWTfv-7kBAdX0C3n+9Wo8Mw6kuUjzacP+Rmfd-@mail.gmail.com" class="iwcQuote" style="border-left: 1px solid rgb(0, 0, 255); padding-left: 13px; margin-left: 0pt;" type="cite"><div class="mimepart text html"><div ><br/></div>
<div>So is the problem is because I have installed through synaptics package manager in ubuntu 10.10 and not through the procedure or due to some other reasons.</div>
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<div>Is there any need for reinstalling the software.</div></div></blockquote><br />We can't possibly tell, because you haven't given us any basis to assess what the problem might be. We also don't have the time to ask a hundred questions like a doctor might :-)<br /><br />Mark